Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   CF65_RS04385 Genome accession   NZ_CP007502
Coordinates   872966..875797 (-) Length   943 a.a.
NCBI ID   WP_025298238.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans HK1651     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 867966..880797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF65_RS04350 (CF65_01280) - 868303..868593 (+) 291 WP_005544374.1 co-chaperone GroES -
  CF65_RS04355 (CF65_01284) groL 868714..870357 (+) 1644 WP_005547876.1 chaperonin GroEL -
  CF65_RS04360 (CF65_01286) folD 870446..871303 (-) 858 WP_005547874.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  CF65_RS04375 (CF65_01287) - 871720..872229 (-) 510 WP_012820881.1 IS3 family transposase -
  CF65_RS10410 (CF65_01289) - 872522..872861 (-) 340 Protein_862 transposase -
  CF65_RS04385 (CF65_01291) uvrA 872966..875797 (-) 2832 WP_025298238.1 excinuclease ABC subunit UvrA Machinery gene
  CF65_RS04390 (CF65_01292) ssb 875967..876446 (+) 480 WP_005544986.1 single-stranded DNA-binding protein Machinery gene
  CF65_RS04395 (CF65_01294) - 876552..877406 (-) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  CF65_RS04400 (CF65_01295) aroB 877409..878497 (-) 1089 WP_005544982.1 3-dehydroquinate synthase -
  CF65_RS04405 (CF65_01296) aroK 878521..879048 (-) 528 WP_005555432.1 shikimate kinase AroK -
  CF65_RS04410 (CF65_01297) comE 879262..880671 (-) 1410 WP_005566816.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104393.27 Da        Isoelectric Point: 7.1443

>NTDB_id=105069 CF65_RS04385 WP_025298238.1 872966..875797(-) (uvrA) [Aggregatibacter actinomycetemcomitans HK1651]
MDTIDIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPHHHVPLTAQTISQMVDKVLSLPEDSKMMLLAPVVKERKG
EHVKLLQQIAAQGYIRARIDGEICDLSDPPKLELHKKHTIEVVVDRFKVRSDLATRLAESFETTLELSGGTAVVAYMDDP
KAEELVFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEKRVVQNPNISLANGAIKGWDRRNFYYYQM
LTSLSKHYHFDIETPFEALPKKIQQIILNGSGKEEIEFQYMNDRGDVVLRRHAFEGILNSMARRYKETESMSVREELAKH
ISNRPCADCGGSRLRPEARNVYIEQTNLPEVSEKSIGEALDFFGDLQLSGQKAQIAEKILKEIKERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAILSADHIIDI
GPGAGVHGGSVIAEGTAQQIMQNPNSLTGKFLSGTEKIEIPKKRTALDKKKMLKLFGASGNNLKNVNLDIPVGLFTCITG
VSGSGKSTLINDTLFPIAQNALNRAENAEVSPYKSIKGLEFFDKVIDINQSPIGRTPRSNPATYTGVFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEDAREFF
DAIPMIARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLSVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAKMEGSHTARFLKEILAKG

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=105069 CF65_RS04385 WP_025298238.1 872966..875797(-) (uvrA) [Aggregatibacter actinomycetemcomitans HK1651]
ATGGATACCATCGACATTCGTGGGGCGCGAACCCACAATCTGAAAAATATTAACTTAACCATTCCACGCGACAAACTTAT
CGTTATCACCGGTTTATCCGGTTCGGGCAAGTCTTCGCTGGCGTTTGATACCCTGTATGCGGAAGGACAACGCCGTTATG
TGGAATCCCTTTCTGCCTATGCGCGCCAGTTTCTGTCATTAATGGAAAAGCCTGATGTGGACCACATTGAAGGGCTTTCA
CCGGCGATTTCCATTGAGCAAAAATCCACCTCCCATAACCCGCGTTCAACGGTGGGGACGATTACCGAAATTCATGATTA
CCTGCGTTTATTGTTTGCCCGCGTGGGCGAACCGCGCTGTCCGCATCATCATGTTCCGCTCACCGCGCAAACCATCAGCC
AAATGGTGGATAAAGTACTTTCCCTGCCGGAAGACAGCAAAATGATGCTGTTGGCACCGGTGGTGAAAGAACGCAAAGGC
GAACACGTTAAGCTGTTGCAACAAATTGCCGCACAAGGTTACATTCGCGCCCGTATCGATGGCGAAATTTGTGATTTATC
CGATCCACCGAAACTGGAATTACATAAAAAACACACTATTGAAGTGGTGGTGGATCGCTTTAAAGTGCGGTCGGATTTAG
CCACAAGATTGGCGGAATCCTTTGAAACCACGTTGGAATTATCGGGCGGCACGGCAGTGGTTGCCTACATGGACGATCCG
AAAGCGGAAGAGTTGGTGTTCTCCGCCAACTTTGCCTGCCCCCATTGCGGCTACTCCGTGCCGGAACTGGAACCGCGTCT
GTTTTCCTTCAATAACCCGGCAGGGGCGTGTCCGACCTGCGACGGTTTAGGCGTGCAGCAATATTTTGATGAAAAACGCG
TGGTGCAAAATCCGAACATTTCCCTTGCCAACGGCGCCATTAAAGGCTGGGATCGCCGTAATTTTTATTATTATCAAATG
CTCACTTCCCTCTCGAAACACTACCATTTCGACATAGAAACCCCGTTTGAAGCATTACCGAAAAAAATCCAACAGATTAT
TTTGAATGGTTCCGGCAAGGAAGAAATCGAGTTTCAATACATGAACGATCGCGGCGATGTGGTGCTGCGTCGCCACGCCT
TTGAAGGGATTTTGAACAGCATGGCGCGCCGTTATAAAGAAACGGAATCCATGTCGGTGCGCGAAGAACTCGCCAAACAC
ATCAGCAACCGCCCGTGCGCCGATTGCGGCGGTTCCCGCTTACGCCCGGAAGCGCGCAATGTATATATTGAACAAACCAA
CCTGCCGGAGGTGTCGGAAAAAAGCATCGGTGAAGCGTTAGATTTCTTCGGCGATTTACAGCTCAGCGGGCAAAAAGCCC
AAATCGCCGAAAAAATCCTGAAAGAGATAAAAGAGCGGTTACAATTTTTAGTGAATGTAGGCTTGAATTATCTTTCCCTT
TCCCGCTCTGCCGAAACCCTTTCTGGCGGTGAAGCACAACGGATTCGCCTCGCCAGCCAAATCGGCGCAGGATTAGTGGG
TGTGATGTACGTGTTGGATGAACCCTCCATCGGCTTGCACCAACGGGACAATGAACGCCTGCTTAACACGCTGATTCATT
TGCGTAATTTAGGCAATACAGTAATCGTGGTGGAACATGACGAAGACGCCATTTTGAGCGCCGACCACATTATCGACATC
GGACCGGGCGCCGGCGTGCACGGAGGTAGCGTCATCGCCGAAGGCACCGCACAACAAATCATGCAAAATCCGAATTCCCT
CACGGGTAAATTTTTATCGGGCACGGAAAAGATCGAAATACCGAAAAAACGTACCGCACTTGATAAGAAAAAAATGCTCA
AATTGTTCGGCGCTTCCGGTAACAACCTGAAAAACGTCAATTTAGACATTCCCGTGGGCTTATTTACCTGCATCACCGGC
GTGTCCGGTTCAGGTAAATCTACACTGATTAACGACACTCTGTTCCCTATTGCACAAAACGCCTTGAATCGTGCAGAAAA
TGCCGAGGTATCGCCGTACAAGTCCATTAAAGGTTTGGAATTTTTCGATAAAGTTATTGATATTAACCAAAGCCCGATTG
GACGCACGCCACGCTCCAACCCGGCAACTTACACGGGCGTATTCACGCCGATTCGCGAACTGTTTGCCGGCGTACCGGAA
GCCCGTGCGCGCGGTTATAACCCGGGGCGTTTCAGTTTTAACGTGCGCGGCGGGCGCTGTGAAGCCTGCCAGGGCGACGG
CGTAATCAAAGTGGAAATGCACTTCCTGCCCGATGTGTACGTGCCTTGCGACCAATGTAAAGGCAAGCGTTACAATCGCG
AAACCCTGGAAATCCGCTACAAAGGTAAAACCATTCATCAGGTGCTGGACATGACGGTGGAAGATGCGCGCGAGTTTTTC
GATGCCATTCCAATGATTGCGCGTAAATTGCAAACCCTGATTGACGTGGGCTTGTCTTATATTCGCTTGGGGCAATCCTC
TACCACCCTGTCCGGCGGGGAAGCGCAACGGGTGAAACTGGCGACGGAACTCTCCAAACGGGATACGGGCAAAACCCTGT
ATATTCTGGACGAACCGACCACAGGGCTGCATTTTGCCGACATTAAACAATTGCTTTCCGTGTTACACCGTTTACGCGAT
CAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGA
AGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCC
GCTTCCTCAAAGAGATTTTGGCAAAAGGCTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.34

99.682

0.572
  uvrA Streptococcus pneumoniae TIGR4

57.34

99.682

0.572
  uvrA Streptococcus pneumoniae D39

57.34

99.682

0.572