Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   ACEY2B_RS00740 Genome accession   NZ_CP169315
Coordinates   144826..145317 (+) Length   163 a.a.
NCBI ID   WP_374788129.1    Uniprot ID   -
Organism   Lactococcus lactis strain IFLLLBEK1     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 139826..150317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY2B_RS00725 (ACEY2B_00725) rpsB 140708..141475 (+) 768 WP_011836067.1 30S ribosomal protein S2 -
  ACEY2B_RS00730 (ACEY2B_00730) tsf 141597..142625 (+) 1029 WP_015427183.1 translation elongation factor Ts -
  ACEY2B_RS00735 (ACEY2B_00735) ezrA 142830..144560 (+) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  ACEY2B_RS00740 (ACEY2B_00740) comX 144826..145317 (+) 492 WP_374788129.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19788.61 Da        Isoelectric Point: 5.3639

>NTDB_id=1050453 ACEY2B_RS00740 WP_374788129.1 144826..145317(+) (comX) [Lactococcus lactis strain IFLLLBEK1]
MTYYLEEEDFENLFSEIKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPENEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1050453 ACEY2B_RS00740 WP_374788129.1 144826..145317(+) (comX) [Lactococcus lactis strain IFLLLBEK1]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATAAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACGAAATTTAAGGTAAAGTATCATCAAAGATTAATTGATGAGCTAAGACGGAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGAAAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATTTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

97.546

100

0.975
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767

Multiple sequence alignment