Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R9A00_RS03100 Genome accession   NZ_AP028376
Coordinates   602557..603330 (+) Length   257 a.a.
NCBI ID   WP_002875504.1    Uniprot ID   A0A3X9APV7
Organism   Campylobacter jejuni strain BCH-10927     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 597557..608330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A00_RS03085 (B10927_06120) - 598406..600340 (-) 1935 WP_002884143.1 RNB domain-containing ribonuclease -
  R9A00_RS03090 (B10927_06130) ilvC 600459..601481 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  R9A00_RS03095 (B10927_06140) - 601485..602567 (+) 1083 WP_317729468.1 divergent polysaccharide deacetylase family protein -
  R9A00_RS03100 (B10927_06150) dprA 602557..603330 (+) 774 WP_002875504.1 DNA-processing protein DprA Machinery gene
  R9A00_RS03105 (B10927_06160) ruvX 603327..603710 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R9A00_RS03110 (B10927_06170) - 603739..604578 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R9A00_RS03115 (B10927_06180) msrA 604754..605251 (-) 498 WP_002875505.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R9A00_RS03120 (B10927_06190) ppa 605293..605811 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R9A00_RS03125 (B10927_06200) adk 605821..606399 (-) 579 WP_002859580.1 adenylate kinase -
  R9A00_RS03130 (B10927_06210) aspS 606396..608147 (-) 1752 WP_317729469.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28820.56 Da        Isoelectric Point: 6.4874

>NTDB_id=105043 R9A00_RS03100 WP_002875504.1 602557..603330(+) (dprA) [Campylobacter jejuni strain BCH-10927]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYALPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105043 R9A00_RS03100 WP_002875504.1 602557..603330(+) (dprA) [Campylobacter jejuni strain BCH-10927]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAAGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGCTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X9APV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment