Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R9A00_RS02905 Genome accession   NZ_AP028376
Coordinates   557790..558440 (-) Length   216 a.a.
NCBI ID   WP_002855187.1    Uniprot ID   A0A3H9FWN6
Organism   Campylobacter jejuni strain BCH-10927     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 552790..563440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A00_RS02870 (B10927_05660) - 553168..554172 (+) 1005 WP_011049741.1 membrane protein -
  R9A00_RS02875 (B10927_05670) tlyA 554169..554930 (+) 762 WP_317729462.1 TlyA family RNA methyltransferase -
  R9A00_RS02880 (B10927_05680) ribF 554896..555750 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  R9A00_RS02885 (B10927_05690) cmoA 555737..556447 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R9A00_RS02890 (B10927_05700) - 556437..556658 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R9A00_RS02895 (B10927_05710) - 556655..557089 (-) 435 WP_002855128.1 EexN family lipoprotein -
  R9A00_RS02900 (B10927_05720) - 557147..557779 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  R9A00_RS02905 (B10927_05730) CJE0566 557790..558440 (-) 651 WP_002855187.1 DNA/RNA non-specific endonuclease Regulator
  R9A00_RS02910 (B10927_05740) nth 558437..559063 (-) 627 WP_002852225.1 endonuclease III -
  R9A00_RS02915 (B10927_05750) peb4 559144..559965 (+) 822 WP_002879177.1 peptidylprolyl isomerase PEB4 -
  R9A00_RS02920 (B10927_05760) fbaA 559965..561029 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  R9A00_RS02925 (B10927_05770) - 561124..562566 (+) 1443 WP_002875368.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25505.26 Da        Isoelectric Point: 9.7361

>NTDB_id=105042 R9A00_RS02905 WP_002855187.1 557790..558440(-) (CJE0566) [Campylobacter jejuni strain BCH-10927]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105042 R9A00_RS02905 WP_002855187.1 557790..558440(-) (CJE0566) [Campylobacter jejuni strain BCH-10927]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAGGCTTCAAATTTGAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9FWN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment