Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACETK7_RS24420 Genome accession   NZ_CP169287
Coordinates   5250158..5250796 (+) Length   212 a.a.
NCBI ID   WP_214377858.1    Uniprot ID   -
Organism   Pseudomonas hormoni strain G20-18_CNT1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5245158..5255796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETK7_RS24405 (ACETK7_24405) - 5245293..5246561 (+) 1269 WP_214378268.1 IS110 family transposase -
  ACETK7_RS24410 (ACETK7_24410) - 5247183..5247701 (-) 519 WP_214377862.1 DUF2062 domain-containing protein -
  ACETK7_RS24415 (ACETK7_24415) comA 5247837..5250059 (+) 2223 WP_214377860.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACETK7_RS24420 (ACETK7_24420) exbB 5250158..5250796 (+) 639 WP_214377858.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACETK7_RS24425 (ACETK7_24425) - 5250793..5251224 (+) 432 WP_214377856.1 biopolymer transporter ExbD -
  ACETK7_RS24430 (ACETK7_24430) lpxK 5251224..5252234 (+) 1011 WP_214377855.1 tetraacyldisaccharide 4'-kinase -
  ACETK7_RS24435 (ACETK7_24435) - 5252258..5252443 (+) 186 WP_007945752.1 Trm112 family protein -
  ACETK7_RS24440 (ACETK7_24440) kdsB 5252440..5253204 (+) 765 WP_214377853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACETK7_RS24445 (ACETK7_24445) - 5253204..5253668 (+) 465 WP_214377851.1 low molecular weight protein-tyrosine-phosphatase -
  ACETK7_RS24450 (ACETK7_24450) murB 5253665..5254684 (+) 1020 WP_214377849.1 UDP-N-acetylmuramate dehydrogenase -
  ACETK7_RS24455 (ACETK7_24455) - 5254772..5255180 (+) 409 Protein_4815 XdhC family protein -
  ACETK7_RS24460 (ACETK7_24460) - 5255177..5255767 (+) 591 WP_214377847.1 NTP transferase domain-containing protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23131.29 Da        Isoelectric Point: 7.3619

>NTDB_id=1050232 ACETK7_RS24420 WP_214377858.1 5250158..5250796(+) (exbB) [Pseudomonas hormoni strain G20-18_CNT1]
MWELVKSGGWMMLPIILSSIAAMAITAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKRA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=1050232 ACETK7_RS24420 WP_214377858.1 5250158..5250796(+) (exbB) [Pseudomonas hormoni strain G20-18_CNT1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCACCGC
CGAGCGTCTCTGGACCCTGCGTGCCAGCCGTGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AGCAACTCAATAAAGACAAACTCAAGGAACTGCGCGCCAACTCGCCGTTGGGCGAGATCCTGGCGGCGGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCTGCGCGAGTGATTCACGAGCTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGTTGCTGGGGCTGTTGGGCACGGTGTTGGGCATGATCGATATTTTCA
GCGCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATTTCCAAGGCGCTGATTACCACGGCT
GCGGGCCTGATGGTCGGTATCCCGTCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTGGTGCAGGGTGACCGTGACGTGGACCTGTCCGAGGGCAAAAGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.057

0.844

Multiple sequence alignment