Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8946_RS03100 Genome accession   NZ_AP028374
Coordinates   601636..602409 (+) Length   257 a.a.
NCBI ID   WP_317726968.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10881     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 596636..607409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8946_RS03085 (B10881_06090) - 597485..599419 (-) 1935 WP_317726966.1 RNB domain-containing ribonuclease -
  R8946_RS03090 (B10881_06100) ilvC 599538..600560 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  R8946_RS03095 (B10881_06110) - 600564..601646 (+) 1083 WP_317726967.1 divergent polysaccharide deacetylase family protein -
  R8946_RS03100 (B10881_06120) dprA 601636..602409 (+) 774 WP_317726968.1 DNA-processing protein DprA Machinery gene
  R8946_RS03105 (B10881_06130) ruvX 602406..602789 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8946_RS03110 (B10881_06140) - 602818..603657 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8946_RS03115 (B10881_06150) msrA 603833..604330 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8946_RS03120 (B10881_06160) ppa 604372..604890 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8946_RS03125 (B10881_06170) adk 604900..605478 (-) 579 WP_002859580.1 adenylate kinase -
  R8946_RS03130 (B10881_06180) aspS 605475..607226 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28804.60 Da        Isoelectric Point: 7.0848

>NTDB_id=105017 R8946_RS03100 WP_317726968.1 601636..602409(+) (dprA) [Campylobacter jejuni strain BCH-10881]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYGNALALSEYEDDYLPKNYDFLLRNRLVIVLSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105017 R8946_RS03100 WP_317726968.1 601636..602409(+) (dprA) [Campylobacter jejuni strain BCH-10881]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGGAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGTTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.276

100

0.973
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment