Detailed information    

insolico Bioinformatically predicted

Overview


Name   ssb   Type   Machinery gene
Locus tag   ACEWY1_RS03755 Genome accession   NZ_CP169266
Coordinates   756884..757279 (+) Length   131 a.a.
NCBI ID   WP_048665209.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBC235     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context


Location: 751884..762279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEWY1_RS03725 (ACEWY1_03725) - 753142..753546 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACEWY1_RS03730 (ACEWY1_03730) - 753884..753976 (+) 93 WP_001790611.1 hypothetical protein -
  ACEWY1_RS03735 (ACEWY1_03735) - 754108..754341 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACEWY1_RS03740 (ACEWY1_03740) murA 754452..755717 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACEWY1_RS03745 (ACEWY1_03745) fabZ 755751..756191 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACEWY1_RS03750 (ACEWY1_03750) - 756250..756690 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACEWY1_RS03755 (ACEWY1_03755) ssb 756884..757279 (+) 396 WP_048665209.1 single-stranded DNA-binding protein Machinery gene
  ACEWY1_RS03760 (ACEWY1_03760) sceD 757668..758363 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  ACEWY1_RS03765 (ACEWY1_03765) tenA 758749..759438 (+) 690 WP_000396077.1 thiaminase II -
  ACEWY1_RS03770 (ACEWY1_03770) thiD 759431..760261 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACEWY1_RS03775 (ACEWY1_03775) thiM 760245..761036 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  ACEWY1_RS03780 (ACEWY1_03780) thiE 761038..761679 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence


Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1050107 ACEWY1_RS03755 WP_048665209.1 756884..757279(+) (ssb) [Staphylococcus aureus strain CBC235]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEIISDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1050107 ACEWY1_RS03755 WP_048665209.1 756884..757279(+) (ssb) [Staphylococcus aureus strain CBC235]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTATCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992

  ssb Staphylococcus aureus MW2

98.473

100

0.985


Multiple sequence alignment