Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AKG93_RS13840 Genome accession   NZ_CP169261
Coordinates   3046024..3046638 (+) Length   204 a.a.
NCBI ID   WP_005446268.1    Uniprot ID   A0A9X3MGU4
Organism   Vibrio harveyi strain VH2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3041024..3051638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKG93_RS13820 (AKG93_013820) - 3041310..3042227 (-) 918 WP_053052978.1 ABC transporter ATP-binding protein -
  AKG93_RS13825 (AKG93_013825) - 3042461..3044131 (-) 1671 WP_053052952.1 SulP family inorganic anion transporter -
  AKG93_RS13830 (AKG93_013830) can 3044415..3045083 (+) 669 WP_005446273.1 carbonate dehydratase -
  AKG93_RS13835 (AKG93_013835) hpt 3045172..3045702 (-) 531 WP_005446271.1 hypoxanthine phosphoribosyltransferase -
  AKG93_RS13840 (AKG93_013840) opaR 3046024..3046638 (+) 615 WP_005446268.1 transcriptional regulator OpaR Regulator
  AKG93_RS13845 (AKG93_013845) lpdA 3046960..3048390 (-) 1431 WP_053052951.1 dihydrolipoyl dehydrogenase -
  AKG93_RS13850 (AKG93_013850) aceF 3048634..3050535 (-) 1902 WP_017817680.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23559.82 Da        Isoelectric Point: 6.0756

>NTDB_id=1050036 AKG93_RS13840 WP_005446268.1 3046024..3046638(+) (opaR) [Vibrio harveyi strain VH2]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1050036 AKG93_RS13840 WP_005446268.1 3046024..3046638(+) (opaR) [Vibrio harveyi strain VH2]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCTGATATTGCAGAGATTGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCAACTCGCGAAGACTTGGTGGATGAAGTTCTGAATCACGTGGTTCGTCAATTCTCGAACTTCTTATCA
GATAACATCGACTTAGACATTCATGCACGCGAGAACATCGCTAACATCACTAACGCAATGATTGAACTAGTAAGCCAAGA
TTGCCATTGGTTGAAAGTTTGGTTCGAGTGGAGTGCATCAACACGTGATGAAGTGTGGCCACTATTCGTAACGACAAACC
GCACCAACCAACTGCTGGTGCAAAACATGTTCATCAAAGCTATCGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCATGGTATTTGTTACTCTATCTTCGTACAAGCAAATCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

100

0.956
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment