Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8947_RS03505 | Genome accession | NZ_AP028371 |
| Coordinates | 704956..705261 (-) | Length | 101 a.a. |
| NCBI ID | WP_052774028.1 | Uniprot ID | A0A6C7TAM1 |
| Organism | Campylobacter coli strain BCH-10879 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 699956..710261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8947_RS03470 (B10879_06910) | - | 700371..701132 (+) | 762 | WP_025431509.1 | ATP-binding protein | - |
| R8947_RS03475 (B10879_06920) | - | 701129..701812 (+) | 684 | WP_002791740.1 | 3-methyladenine DNA glycosylase | - |
| R8947_RS03480 (B10879_06930) | thiD | 701812..702624 (+) | 813 | WP_002797568.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8947_RS03485 (B10879_06940) | thiE | 702614..703246 (+) | 633 | WP_002777120.1 | thiamine phosphate synthase | - |
| R8947_RS03490 (B10879_06950) | - | 703224..703853 (+) | 630 | WP_052774030.1 | uroporphyrinogen-III synthase | - |
| R8947_RS03495 (B10879_06960) | - | 703846..704298 (-) | 453 | WP_002777117.1 | hypothetical protein | - |
| R8947_RS03500 (B10879_06970) | - | 704295..704963 (-) | 669 | WP_052774029.1 | hypothetical protein | - |
| R8947_RS03505 (B10879_06980) | ctsT | 704956..705261 (-) | 306 | WP_052774028.1 | hypothetical protein | Machinery gene |
| R8947_RS03510 (B10879_06990) | proC | 705258..705995 (-) | 738 | WP_002780246.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8947_RS03515 (B10879_07000) | fliW | 705995..706384 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| R8947_RS03520 (B10879_07010) | - | 706548..707195 (+) | 648 | WP_002780248.1 | outer membrane protein assembly factor BamD | - |
| R8947_RS03525 (B10879_07020) | lon | 707211..709586 (+) | 2376 | WP_057044711.1 | endopeptidase La | - |
| R8947_RS03530 (B10879_07030) | rpsR | 709643..709903 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12430.26 Da Isoelectric Point: 6.0617
>NTDB_id=105001 R8947_RS03505 WP_052774028.1 704956..705261(-) (ctsT) [Campylobacter coli strain BCH-10879]
MKVAFSLLEFILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLEFILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=105001 R8947_RS03505 WP_052774028.1 704956..705261(-) (ctsT) [Campylobacter coli strain BCH-10879]
ATGAAAGTTGCATTCTCGCTTTTAGAATTTATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTTATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |