Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABGU82_RS06095 Genome accession   NZ_OZ040208
Coordinates   1253740..1254477 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate 30224_1#333     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1248740..1259477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU82_RS06065 yfiL 1248899..1249264 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  ABGU82_RS06070 aroF 1249474..1250544 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ABGU82_RS06075 tyrA 1250555..1251676 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ABGU82_RS06080 pheA 1251719..1252879 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  ABGU82_RS06085 pheL 1252978..1253025 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ABGU82_RS06090 raiA 1253129..1253470 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ABGU82_RS06095 comL 1253740..1254477 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ABGU82_RS06100 rluD 1254612..1255592 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABGU82_RS06105 yfiH 1255589..1256320 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  ABGU82_RS06110 clpC 1256450..1259023 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1049933 ABGU82_RS06095 WP_000197686.1 1253740..1254477(-) (comL) [Escherichia coli isolate 30224_1#333]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1049933 ABGU82_RS06095 WP_000197686.1 1253740..1254477(-) (comL) [Escherichia coli isolate 30224_1#333]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376