Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8621_RS07140 Genome accession   NZ_AP028370
Coordinates   1404603..1404914 (-) Length   103 a.a.
NCBI ID   WP_052804724.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10767     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399603..1409914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8621_RS07120 (B10767_14050) ctsE 1400472..1402031 (-) 1560 WP_087699168.1 GspE/PulE family protein Machinery gene
  R8621_RS07125 (B10767_14060) ctsX 1402021..1402608 (-) 588 WP_052858355.1 transformation system protein Machinery gene
  R8621_RS07130 (B10767_14070) ctsP 1402612..1403220 (-) 609 WP_087699836.1 ATP-binding protein Machinery gene
  R8621_RS07135 (B10767_14080) ctsD 1403213..1404625 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8621_RS07140 (B10767_14090) ctsR 1404603..1404914 (-) 312 WP_052804724.1 hypothetical protein Machinery gene
  R8621_RS07145 (B10767_14100) nifJ 1404938..1408498 (-) 3561 WP_052804723.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8621_RS07150 (B10767_14110) - 1408591..1409232 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12461.40 Da        Isoelectric Point: 6.4656

>NTDB_id=104984 R8621_RS07140 WP_052804724.1 1404603..1404914(-) (ctsR) [Campylobacter jejuni strain BCH-10767]
MCFSTLFAQDNFEEYFKLIDKENRINFNILQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104984 R8621_RS07140 WP_052804724.1 1404603..1404914(-) (ctsR) [Campylobacter jejuni strain BCH-10767]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATTGATAAAGAAAATCGCATAAATTT
TAATATTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACCAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment