Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   R8621_RS07120 Genome accession   NZ_AP028370
Coordinates   1400472..1402031 (-) Length   519 a.a.
NCBI ID   WP_087699168.1    Uniprot ID   A0A5T0Z6R8
Organism   Campylobacter jejuni strain BCH-10767     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395472..1407031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8621_RS07095 (B10767_14000) - 1395482..1395916 (+) 435 WP_087700216.1 flagellar protein FlgN -
  R8621_RS07100 (B10767_14010) flgK 1395926..1397752 (+) 1827 WP_087700218.1 flagellar hook-associated protein FlgK -
  R8621_RS07105 (B10767_14020) - 1397769..1398533 (+) 765 WP_201459028.1 TIGR02757 family protein -
  R8621_RS07110 (B10767_14030) - 1398537..1399301 (+) 765 WP_087699164.1 TSUP family transporter -
  R8621_RS07115 (B10767_14040) ctsF 1399294..1400475 (-) 1182 WP_087699166.1 type II secretion system F family protein Machinery gene
  R8621_RS07120 (B10767_14050) ctsE 1400472..1402031 (-) 1560 WP_087699168.1 GspE/PulE family protein Machinery gene
  R8621_RS07125 (B10767_14060) ctsX 1402021..1402608 (-) 588 WP_052858355.1 transformation system protein Machinery gene
  R8621_RS07130 (B10767_14070) ctsP 1402612..1403220 (-) 609 WP_087699836.1 ATP-binding protein Machinery gene
  R8621_RS07135 (B10767_14080) ctsD 1403213..1404625 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8621_RS07140 (B10767_14090) ctsR 1404603..1404914 (-) 312 WP_052804724.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60114.87 Da        Isoelectric Point: 5.5692

>NTDB_id=104980 R8621_RS07120 WP_087699168.1 1400472..1402031(-) (ctsE) [Campylobacter jejuni strain BCH-10767]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENQKSDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLAYAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=104980 R8621_RS07120 WP_087699168.1 1400472..1402031(-) (ctsE) [Campylobacter jejuni strain BCH-10767]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAAAAAATTAGCAAATTTTTGTAATTTGCATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAATAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTGGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAAGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCAAAAAAGTGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGACGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAAATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGCCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATCTCTGCAGAAGATCCT
ATAGAGTATAAAATTCCTTTAGTGCAGCAAATTTTGCTCAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCAGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAATGCTTAGAGATCAATGAAGATTTAGCTTATGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTGAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0Z6R8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.422

100

0.994

Multiple sequence alignment