Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACETWW_RS01805 Genome accession   NZ_CP169072
Coordinates   335225..335662 (-) Length   145 a.a.
NCBI ID   WP_132106741.1    Uniprot ID   -
Organism   Bacillus velezensis strain T971     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 330225..340662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETWW_RS01780 (ACETWW_01780) - 331245..332381 (+) 1137 WP_374004749.1 zinc-dependent alcohol dehydrogenase -
  ACETWW_RS01785 (ACETWW_01785) - 332396..332830 (+) 435 WP_007409358.1 RDD family protein -
  ACETWW_RS01790 (ACETWW_01790) - 332947..333225 (+) 279 WP_263612330.1 YckD family protein -
  ACETWW_RS01795 (ACETWW_01795) - 333329..334765 (+) 1437 WP_025284208.1 glycoside hydrolase family 1 protein -
  ACETWW_RS01800 (ACETWW_01800) nin/comJ 334806..335204 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  ACETWW_RS01805 (ACETWW_01805) nucA/comI 335225..335662 (-) 438 WP_132106741.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACETWW_RS01810 (ACETWW_01810) hxlB 336019..336576 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  ACETWW_RS01815 (ACETWW_01815) hxlA 336573..337208 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  ACETWW_RS01820 (ACETWW_01820) - 337440..337802 (+) 363 WP_012116770.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16042.33 Da        Isoelectric Point: 8.4850

>NTDB_id=1049706 ACETWW_RS01805 WP_132106741.1 335225..335662(-) (nucA/comI) [Bacillus velezensis strain T971]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSGICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1049706 ACETWW_RS01805 WP_132106741.1 335225..335662(-) (nucA/comI) [Bacillus velezensis strain T971]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCGGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment