Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABGU65_RS06110 Genome accession   NZ_OZ040015
Coordinates   1254340..1255077 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate 30224_1#291     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249340..1260077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU65_RS06080 - 1249565..1249864 (-) 300 WP_220298493.1 DUF2799 domain-containing protein -
  ABGU65_RS06085 aroF 1250074..1251144 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ABGU65_RS06090 tyrA 1251155..1252276 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ABGU65_RS06095 pheA 1252319..1253479 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  ABGU65_RS06100 pheL 1253578..1253625 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ABGU65_RS06105 raiA 1253729..1254070 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ABGU65_RS06110 comL 1254340..1255077 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ABGU65_RS06115 rluD 1255212..1256192 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABGU65_RS06120 yfiH 1256189..1256920 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  ABGU65_RS06125 clpC 1257050..1259623 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1049587 ABGU65_RS06110 WP_000197686.1 1254340..1255077(-) (comL) [Escherichia coli isolate 30224_1#291]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1049587 ABGU65_RS06110 WP_000197686.1 1254340..1255077(-) (comL) [Escherichia coli isolate 30224_1#291]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376