Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACEUKD_RS22450 Genome accession   NZ_CP169051
Coordinates   1614686..1615867 (-) Length   393 a.a.
NCBI ID   WP_374092113.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609686..1620867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS22435 (ACEUKD_22435) - 1610916..1611464 (+) 549 WP_005398196.1 GNAT family N-acetyltransferase -
  ACEUKD_RS22440 (ACEUKD_22440) - 1611552..1612169 (-) 618 WP_374092112.1 HAD family hydrolase -
  ACEUKD_RS22445 (ACEUKD_22445) cqsS 1612537..1614582 (+) 2046 WP_268853358.1 response regulator Regulator
  ACEUKD_RS22450 (ACEUKD_22450) cqsA 1614686..1615867 (-) 1182 WP_374092113.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACEUKD_RS22455 (ACEUKD_22455) ylqF 1616207..1617151 (-) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  ACEUKD_RS22460 (ACEUKD_22460) - 1617830..1618984 (+) 1155 WP_374092114.1 EAL domain-containing protein -
  ACEUKD_RS22465 (ACEUKD_22465) - 1618989..1619138 (+) 150 WP_048624969.1 hypothetical protein -
  ACEUKD_RS22470 (ACEUKD_22470) - 1619145..1620506 (+) 1362 WP_006742317.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43659.97 Da        Isoelectric Point: 6.4452

>NTDB_id=1049576 ACEUKD_RS22450 WP_374092113.1 1614686..1615867(-) (cqsA) [Vibrio diabolicus strain SF42]
MSETIQSKPLPSFIEERLDFHIQDLIEPNENKKHLVLGKRPPCNAIVMQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTN
HLRKQVSRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLNVIKKADDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVFGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLSACQQAFVHPDLDFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1049576 ACEUKD_RS22450 WP_374092113.1 1614686..1615867(-) (cqsA) [Vibrio diabolicus strain SF42]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTTCCTTTATTGAGGAACGCCTAGATTTTCATATCCAAGATCTAATCGA
ACCGAATGAGAACAAGAAACACCTTGTTCTTGGTAAACGTCCACCGTGTAATGCCATTGTTATGCAAAGCAATGATTACC
TTGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCTCAACACGATGACAACGTCGTGATGTCC
GCGATTTTCTTGCAAGATGATGAGTCGAAACCTGCATTTGAAACTCAACTAGCCAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCGGGATGGGCTGCGAATGTCGGTTTATTACAGACTATTTGTGCACCGAACATACCTGTGTATATCGACT
TCTTTGCGCATATGTCTTTATGGGAAGGTGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAAC
CACTTACGAAAACAGGTTTCACGCCATGGTTCGGGAATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAAGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTCCGCAAGGCGCTGGACTACTGCAAGAGCTGGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGTGCAGAAAAGCTGGCTAAGACGCTTCCATTTGTCGCGTATCCTGCCAT
TTTCAGCTCCACCGTGTTACCGCAAGAAATTATTCGGTTAGAAAAAACACTGAACGTCATAAAAAAAGCCGATGACAAAC
GGGAAATTTTGTTTAAAAGAGCGAAGTCTCTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTCTAGAAGAAAGGAATGTCTTTGGTGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGATCACGTTCTTTCCGCCTGCCAACAAGCGTTTGTTCATCCTGATCTAGATTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment