Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   ACEUKD_RS22445 Genome accession   NZ_CP169051
Coordinates   1612537..1614582 (+) Length   681 a.a.
NCBI ID   WP_268853358.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607537..1619582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS22425 (ACEUKD_22425) dcuC 1607795..1609162 (-) 1368 WP_374092111.1 anaerobic C4-dicarboxylate transporter DcuC -
  ACEUKD_RS22430 (ACEUKD_22430) - 1609519..1610643 (-) 1125 WP_005398197.1 fatty acid desaturase -
  ACEUKD_RS22435 (ACEUKD_22435) - 1610916..1611464 (+) 549 WP_005398196.1 GNAT family N-acetyltransferase -
  ACEUKD_RS22440 (ACEUKD_22440) - 1611552..1612169 (-) 618 WP_374092112.1 HAD family hydrolase -
  ACEUKD_RS22445 (ACEUKD_22445) cqsS 1612537..1614582 (+) 2046 WP_268853358.1 response regulator Regulator
  ACEUKD_RS22450 (ACEUKD_22450) cqsA 1614686..1615867 (-) 1182 WP_374092113.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACEUKD_RS22455 (ACEUKD_22455) ylqF 1616207..1617151 (-) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  ACEUKD_RS22460 (ACEUKD_22460) - 1617830..1618984 (+) 1155 WP_374092114.1 EAL domain-containing protein -
  ACEUKD_RS22465 (ACEUKD_22465) - 1618989..1619138 (+) 150 WP_048624969.1 hypothetical protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78093.53 Da        Isoelectric Point: 5.3911

>NTDB_id=1049575 ACEUKD_RS22445 WP_268853358.1 1612537..1614582(+) (cqsS) [Vibrio diabolicus strain SF42]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWDFVFPQAYENLPLRLFCSLLFFGIIFRNRLSSTWRKYIHIYYQVTIT
ICLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKEAEKDQYLMSGEDVTLLREVSEDAMN
IIQSGNETIDLLLTSIDENRVSRSSFQKHSAHSVVEKAIESFSYKRATDRFAISLDARSEFDFLGSDTLLKYVMYNLFKN
AFHHRTSEDFHIHVSMTSTEHSNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPPITSDIVTEIKNDLTKLKTILTVTNQDILVSKVTDISRFMGFESTILDVNQVLKKKEYEFEFDLIFIDLE
SLDARANQLDRLESLLSFTEARIVYLFEHHPTQRACKAAYEPIWVETQAWLLNTKPTIDRLLYDSSYVSTPTASVALDTS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQREDGQQALDTLEQENVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=1049575 ACEUKD_RS22445 WP_268853358.1 1612537..1614582(+) (cqsS) [Vibrio diabolicus strain SF42]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCCAACCTGACTCTCGTTGGTTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTTTGGGATTTTGTTTTCCCACAGGCTTATGAAAACTTGCCGCTCAGATTGTTTTGTTCACTATTGT
TCTTTGGCATCATTTTTAGAAATCGCCTGTCGTCAACGTGGCGAAAATATATCCATATTTACTACCAAGTGACGATAACG
ATCTGCTTACCGTTTTTCTTTTTCTATATGTTACTGATGAATGACTGGTCCAATGTTTGGGTCATGTCATTTATGTCCGC
GATTTTCTTGCACATTCTATTGGTTCATGTCACAAGAGTTATGTTCGCTCAAACTTTTGCCGGAATAGGTTTAGCGACAT
TCTTTGCTTGGGTGGCGAAAGGGTTTCATCTCGATTTAACAATGGACTGGACGCATGTGCCAATCTTTCTCTTTATTTAT
GTATTTGGCAATTTATTCTACTTTCGGAACCAAGTAGAGCACGAAGCGAAAGTGTCGTTGGCCAAGTCATTCGGGGCCGG
AATTGCGCATGAAATGCGTAACCCTTTAAGTGGCCTTTGCACGTCAATCGATGTTATCCAATCAGTCTTACCCAATAAAA
AAGAAGCCGAGAAAGACCAATATCTGATGAGCGGAGAGGATGTCACCCTGCTGCGCGAAGTTAGTGAGGATGCGATGAAC
ATCATCCAGTCGGGCAACGAGACGATAGATTTACTTCTGACATCGATAGACGAAAACCGTGTCTCGCGATCCAGTTTCCA
AAAGCATTCTGCTCACTCAGTGGTTGAAAAAGCGATTGAAAGCTTTAGTTATAAGCGTGCGACGGATCGCTTTGCTATAT
CCCTAGATGCGAGAAGTGAGTTTGATTTTCTTGGTAGCGATACCTTACTTAAATACGTTATGTATAACCTTTTCAAGAAC
GCCTTCCATCACCGCACATCTGAAGATTTCCACATACATGTGTCCATGACGAGTACGGAGCACTCAAACCAAATCGTTGT
AACCGATAATGGTGCTGGTATTGCTCCTGATGTCCTACGTAATATATTTCAGGACTTTTACACAACTGGTAAGTCAGGCA
GCTATGGTTTGGGTTTGCCATTTTGTAAAAAAGTGATGCGTTCTTTTGGAGGTAACATTGAATGCCAGTCTCAGCTAGGT
GAGTGGTCTCAGTTCACGTTAACTTTCCCGCCGATCACATCTGATATCGTGACTGAAATTAAAAACGATTTGACCAAACT
CAAAACCATCCTAACGGTGACTAATCAAGATATTCTTGTGTCGAAAGTGACGGACATTAGCCGTTTTATGGGTTTTGAAT
CAACGATCTTAGATGTTAATCAAGTGCTCAAAAAGAAAGAGTATGAGTTCGAATTCGACCTGATTTTTATCGATCTTGAG
AGCTTGGATGCAAGAGCAAACCAATTAGATAGATTAGAATCTCTTCTGTCTTTCACGGAAGCTCGTATCGTTTATCTTTT
TGAGCATCACCCGACACAGAGAGCATGCAAAGCGGCATATGAGCCTATTTGGGTCGAGACTCAAGCCTGGTTATTGAATA
CTAAGCCAACCATTGACCGTCTCTTGTATGATTCAAGCTATGTGTCGACACCAACGGCCTCAGTGGCTTTGGATACGTCA
AATAAGCGGACAATTATGGTCGTGGATGATAACGAATCTTTGCGAAAATTTACCGCGATGTTACTCGAAAAGCAGGGCTT
TGAAGTGATTCAGAGAGAAGACGGGCAGCAAGCACTGGATACATTAGAACAAGAGAACGTTGACCTCATTCTTATGGATA
TCGAGATGCCCATCATGGATGGTGTAGAAGCTTCAAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCAGTACCTATT
ATTGCGCATACTGGGGATAGCTCACCTGTTACGCTGGACAAAATAGGCTCTTCTGGCATGTCTGACTTTATCGTGAAACC
AGCGGATAAAAATCGCTTATTCGACAAAATCGCAAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(565-677)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.489

100

0.498

Multiple sequence alignment