Detailed information NTG1049548

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABGU85_RS22010
• Genome accession: NZ_OZ039848
• Coordinates: 4521296..4522321 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli isolate 30345_1#247
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4516296..4527321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABGU85_RS21990	metJ	4517481..4517798 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
ABGU85_RS21995	yiiX	4517858..4518466 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
ABGU85_RS22000	rpmE	4518527..4518739 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ABGU85_RS22005	priA	4518942..4521140 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
ABGU85_RS22010	cytR	4521296..4522321 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
ABGU85_RS22015	ftsN	4522413..4523372 (+)	960	WP_000068834.1	cell division protein FtsN	-
ABGU85_RS22020	hslV	4523465..4523995 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ABGU85_RS22025	hslU	4524005..4525336 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
ABGU85_RS22030	menA	4525403..4526329 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABGU85_RS22035	rraA	4526422..4526907 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ABGU85_RS22040	zapB	4526992..4527237 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=1049548 ABGU85_RS22010 WP_000644908.1 4521296..4522321(+) (cytR) [Escherichia coli isolate 30345_1#247]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1049548 ABGU85_RS22010 WP_000644908.1 4521296..4522321(+) (cytR) [Escherichia coli isolate 30345_1#247]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625