Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8620_RS03025 Genome accession   NZ_AP028369
Coordinates   578374..579147 (+) Length   257 a.a.
NCBI ID   WP_002857196.1    Uniprot ID   A0AAD2Z1Q2
Organism   Campylobacter jejuni strain BCH-10666     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 573374..584147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8620_RS03010 (B10666_05900) - 574223..576157 (-) 1935 WP_052804452.1 RNB domain-containing ribonuclease -
  R8620_RS03015 (B10666_05910) ilvC 576276..577298 (+) 1023 WP_052804453.1 ketol-acid reductoisomerase -
  R8620_RS03020 (B10666_05920) - 577302..578384 (+) 1083 WP_317650853.1 divergent polysaccharide deacetylase family protein -
  R8620_RS03025 (B10666_05930) dprA 578374..579147 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  R8620_RS03030 (B10666_05940) ruvX 579144..579527 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX -
  R8620_RS03035 (B10666_05950) - 579556..580395 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8620_RS03040 (B10666_05960) msrA 580571..581068 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8620_RS03045 (B10666_05970) ppa 581109..581627 (-) 519 WP_002855031.1 inorganic diphosphatase -
  R8620_RS03050 (B10666_05980) adk 581637..582215 (-) 579 WP_002855137.1 adenylate kinase -
  R8620_RS03055 (B10666_05990) aspS 582212..583963 (-) 1752 WP_052804469.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28740.54 Da        Isoelectric Point: 7.6510

>NTDB_id=104938 R8620_RS03025 WP_002857196.1 578374..579147(+) (dprA) [Campylobacter jejuni strain BCH-10666]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SIAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104938 R8620_RS03025 WP_002857196.1 578374..579147(+) (dprA) [Campylobacter jejuni strain BCH-10666]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAACCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCCCATCTTTGTGTGGTAAGTGGTGGTGCTTTGGGTGTGGATATCACCGCA
AGTATAGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment