Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABGU56_RS06435 Genome accession   NZ_OZ039820
Coordinates   1323218..1323955 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate 30134_6#3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318218..1328955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU56_RS06405 yfiL 1318377..1318742 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  ABGU56_RS06410 aroF 1318952..1320022 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ABGU56_RS06415 tyrA 1320033..1321154 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ABGU56_RS06420 pheA 1321197..1322357 (-) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  ABGU56_RS06425 pheL 1322456..1322503 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ABGU56_RS06430 raiA 1322607..1322948 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ABGU56_RS06435 comL 1323218..1323955 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ABGU56_RS06440 rluD 1324090..1325070 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABGU56_RS06445 yfiH 1325067..1325798 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  ABGU56_RS06450 clpC 1325928..1328501 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1049335 ABGU56_RS06435 WP_000197686.1 1323218..1323955(-) (comL) [Escherichia coli isolate 30134_6#3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1049335 ABGU56_RS06435 WP_000197686.1 1323218..1323955(-) (comL) [Escherichia coli isolate 30134_6#3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376