Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACEQ85_RS10070 Genome accession   NZ_CP168966
Coordinates   2115913..2116542 (-) Length   209 a.a.
NCBI ID   WP_064786482.1    Uniprot ID   -
Organism   Acinetobacter pittii strain LS-AP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2110913..2121542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEQ85_RS10035 (ACEQ85_10035) mlaE 2111246..2112022 (+) 777 WP_373882548.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACEQ85_RS10040 (ACEQ85_10040) - 2112022..2112702 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACEQ85_RS10045 (ACEQ85_10045) - 2112729..2113370 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  ACEQ85_RS10050 (ACEQ85_10050) - 2113382..2113669 (+) 288 WP_005078357.1 lipid asymmetry maintenance protein MlaB -
  ACEQ85_RS10055 (ACEQ85_10055) - 2113742..2114755 (-) 1014 WP_005078356.1 magnesium and cobalt transport protein CorA -
  ACEQ85_RS10060 (ACEQ85_10060) - 2114914..2115495 (+) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  ACEQ85_RS10065 (ACEQ85_10065) mutT 2115510..2115911 (+) 402 WP_002116701.1 NUDIX domain-containing protein -
  ACEQ85_RS10070 (ACEQ85_10070) comF 2115913..2116542 (-) 630 WP_064786482.1 ComF family protein Machinery gene
  ACEQ85_RS10075 (ACEQ85_10075) recG 2116535..2118580 (-) 2046 WP_005078352.1 ATP-dependent DNA helicase RecG -
  ACEQ85_RS10080 (ACEQ85_10080) - 2118601..2119416 (+) 816 WP_064786480.1 NAD-dependent epimerase/dehydratase family protein -
  ACEQ85_RS10085 (ACEQ85_10085) - 2119496..2120479 (+) 984 WP_025466709.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24529.74 Da        Isoelectric Point: 9.9657

>NTDB_id=1048994 ACEQ85_RS10070 WP_064786482.1 2115913..2116542(-) (comF) [Acinetobacter pittii strain LS-AP]
MFSFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTVCLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1048994 ACEQ85_RS10070 WP_064786482.1 2115913..2116542(-) (comF) [Acinetobacter pittii strain LS-AP]
ATGTTTAGTTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACATTTAAAAATACCTGTTTGGCAACCGATTC
AACGTTTAAACGAGCACTCTCAAAAAGGGCTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACCGTGTGCCTAGCAGCGACGCCGAAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823

Multiple sequence alignment