Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8945_RS03075 Genome accession   NZ_AP028363
Coordinates   592335..593108 (+) Length   257 a.a.
NCBI ID   WP_032584684.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10617     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 587335..598108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8945_RS03060 (B10617_06070) - 588184..590118 (-) 1935 WP_220526005.1 RNB domain-containing ribonuclease -
  R8945_RS03065 (B10617_06080) ilvC 590237..591259 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  R8945_RS03070 (B10617_06090) - 591263..592345 (+) 1083 WP_002934609.1 divergent polysaccharide deacetylase family protein -
  R8945_RS03075 (B10617_06100) dprA 592335..593108 (+) 774 WP_032584684.1 DNA-processing protein DprA Machinery gene
  R8945_RS03080 (B10617_06110) ruvX 593105..593488 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8945_RS03085 (B10617_06120) - 593517..594356 (+) 840 WP_074484747.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8945_RS03090 (B10617_06130) msrA 594532..595029 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8945_RS03095 (B10617_06140) ppa 595071..595589 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8945_RS03100 (B10617_06150) adk 595599..596177 (-) 579 WP_002859580.1 adenylate kinase -
  R8945_RS03105 (B10617_06160) aspS 596174..597925 (-) 1752 WP_032584680.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28776.59 Da        Isoelectric Point: 7.6510

>NTDB_id=104855 R8945_RS03075 WP_032584684.1 592335..593108(+) (dprA) [Campylobacter jejuni strain BCH-10617]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYGNALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104855 R8945_RS03075 WP_032584684.1 592335..593108(+) (dprA) [Campylobacter jejuni strain BCH-10617]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGGAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment