Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8617_RS02895 Genome accession   NZ_AP028362
Coordinates   550424..551074 (-) Length   216 a.a.
NCBI ID   WP_002886738.1    Uniprot ID   A0AB36G702
Organism   Campylobacter jejuni strain BCH-10611     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 545424..556074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8617_RS02860 (B10611_05600) - 545802..546806 (+) 1005 WP_079254780.1 hypothetical protein -
  R8617_RS02865 (B10611_05610) tlyA 546803..547564 (+) 762 WP_317652840.1 TlyA family RNA methyltransferase -
  R8617_RS02870 (B10611_05620) ribF 547530..548384 (+) 855 WP_317652841.1 bifunctional riboflavin kinase/FAD synthetase -
  R8617_RS02875 (B10611_05630) cmoA 548371..549081 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8617_RS02880 (B10611_05640) - 549071..549292 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R8617_RS02885 (B10611_05650) - 549289..549723 (-) 435 WP_002855128.1 EexN family lipoprotein -
  R8617_RS02890 (B10611_05660) - 549781..550413 (-) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  R8617_RS02895 (B10611_05670) CJE0566 550424..551074 (-) 651 WP_002886738.1 DNA/RNA non-specific endonuclease Regulator
  R8617_RS02900 (B10611_05680) nth 551071..551697 (-) 627 WP_002852225.1 endonuclease III -
  R8617_RS02905 (B10611_05690) peb4 551778..552599 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  R8617_RS02910 (B10611_05700) fbaA 552599..553663 (+) 1065 WP_057041372.1 class II fructose-bisphosphate aldolase -
  R8617_RS02915 (B10611_05710) - 553758..555200 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.13 Da        Isoelectric Point: 9.6573

>NTDB_id=104827 R8617_RS02895 WP_002886738.1 550424..551074(-) (CJE0566) [Campylobacter jejuni strain BCH-10611]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=104827 R8617_RS02895 WP_002886738.1 550424..551074(-) (CJE0566) [Campylobacter jejuni strain BCH-10611]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAGCCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment