Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   ABNR90_RS03975 Genome accession   NZ_OZ021673
Coordinates   749700..750311 (-) Length   203 a.a.
NCBI ID   WP_050169631.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-002     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 744700..755311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR90_RS03945 dut 745956..746408 (-) 453 WP_003702446.1 dUTP diphosphatase -
  ABNR90_RS03950 - 746574..747283 (+) 710 Protein_774 AzlC family ABC transporter permease -
  ABNR90_RS03955 - 747280..747588 (+) 309 WP_003706588.1 AzlD family protein -
  ABNR90_RS03960 pilL 747658..748131 (-) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  ABNR90_RS03965 pilK 748133..748744 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABNR90_RS03970 pilJ 748723..749703 (-) 981 WP_010951046.1 PilW family protein Machinery gene
  ABNR90_RS03975 pilV 749700..750311 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  ABNR90_RS03980 pilH 750343..751008 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABNR90_RS03985 dnaB 751163..752569 (-) 1407 WP_047917169.1 replicative DNA helicase -
  ABNR90_RS03990 - 752733..753314 (+) 582 WP_003698180.1 superoxide dismutase -
  ABNR90_RS03995 - 753546..754055 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ABNR90_RS04000 - 754382..754714 (-) 333 WP_003687908.1 hypothetical protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22076.13 Da        Isoelectric Point: 4.8546

>NTDB_id=1047993 ABNR90_RS03975 WP_050169631.1 749700..750311(-) (pilV) [Neisseria gonorrhoeae isolate SGC-23-002]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTLSAVDGKFMLDAEKSKAQLAEEQLKRFSHELKNALPDAVAIHYAVCKDSSGDAPTLSDSGAFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1047993 ABNR90_RS03975 WP_050169631.1 749700..750311(-) (pilV) [Neisseria gonorrhoeae isolate SGC-23-002]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGACAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACTATCAGCTGTGGATGGTAAGTTTATGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTCATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGACAGCGGTGCTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.372

100

0.911
  pilV/pilI Neisseria gonorrhoeae MS11

83.744

100

0.837