Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   U5A48_RS06180 Genome accession   NZ_OY856299
Coordinates   1256162..1256899 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC7072022BGR isolate EC7072022     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251162..1261899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5A48_RS06150 (ECOL707_06390) yfiL 1251320..1251685 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  U5A48_RS06155 (ECOL707_06395) aroF 1251895..1252965 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  U5A48_RS06160 (ECOL707_06400) tyrA 1252976..1254097 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  U5A48_RS06165 (ECOL707_06405) pheA 1254140..1255300 (-) 1161 WP_258748353.1 bifunctional chorismate mutase/prephenate dehydratase -
  U5A48_RS06170 (ECOL707_06410) pheL 1255399..1255446 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  U5A48_RS06175 (ECOL707_06415) raiA 1255550..1255891 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  U5A48_RS06180 (ECOL707_06425) comL 1256162..1256899 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  U5A48_RS06185 (ECOL707_06430) rluD 1257034..1258014 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  U5A48_RS06190 (ECOL707_06435) yfiH 1258011..1258742 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  U5A48_RS06195 (ECOL707_06445) clpC 1258872..1261445 (+) 2574 WP_289690931.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1047597 U5A48_RS06180 WP_000197686.1 1256162..1256899(-) (comL) [Escherichia coli strain EC7072022BGR isolate EC7072022]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1047597 U5A48_RS06180 WP_000197686.1 1256162..1256899(-) (comL) [Escherichia coli strain EC7072022BGR isolate EC7072022]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment