Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   U8955_RS07065 Genome accession   NZ_OY769914
Coordinates   1399635..1400231 (-) Length   198 a.a.
NCBI ID   WP_000966754.1    Uniprot ID   A0A1X1J688
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1394635..1405231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS07040 (SDENT7746_07065) - 1395430..1396473 (-) 1044 WP_038805555.1 D-alanine--D-alanine ligase -
  U8955_RS07045 (SDENT7746_07070) - 1396578..1397066 (-) 489 WP_038805556.1 hypothetical protein -
  U8955_RS07050 (SDENT7746_07075) - 1397063..1398694 (-) 1632 WP_038805557.1 polymorphic toxin type 44 domain-containing protein -
  U8955_RS07055 (SDENT7746_07080) - 1398685..1399041 (-) 357 WP_038805558.1 hypothetical protein -
  U8955_RS07060 (SDENT7746_07085) - 1399045..1399320 (-) 276 WP_038805559.1 hypothetical protein -
  U8955_RS07065 (SDENT7746_07090) recR 1399635..1400231 (-) 597 WP_000966754.1 recombination mediator RecR Machinery gene
  U8955_RS07070 (SDENT7746_07095) pbp2b 1400242..1402284 (-) 2043 WP_038805560.1 penicillin-binding protein PBP2B -
  U8955_RS07075 (SDENT7746_07100) - 1402539..1403390 (+) 852 WP_038805561.1 MurR/RpiR family transcriptional regulator -
  U8955_RS07080 (SDENT7746_07105) - 1403387..1403509 (-) 123 WP_265101011.1 hypothetical protein -
  U8955_RS07085 (SDENT7746_07110) - 1403684..1404448 (-) 765 WP_038805562.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21732.87 Da        Isoelectric Point: 4.4927

>NTDB_id=1047534 U8955_RS07065 WP_000966754.1 1399635..1400231(-) (recR) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1047534 U8955_RS07065 WP_000966754.1 1399635..1400231(-) (recR) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGCTGTATCCAACACCTATTGCCAAGCTGATTGATAGCTATTCAAAGCTTCCGGGTATCGGGATTAAAACGGCTACCCG
CCTAGCCTTCTATACTATTGGAATGTCTGATGACGATGTCAATGAATTTGCTAAAAATCTCCTATCTGCCAAGCGGGAAT
TAACCTATTGTTCCATCTGTGGCCGTTTGACCGATGATGATCCTTGCTCTATCTGTACGGACCCGACTCGAGATCAGACA
ACCATCTTGGTGCTAGAGGATAGTCGCGATGTGGCTGCTATGGAAAATATCCAAGAATACCACGGACTCTATCATGTCTT
GCATGGACTCATTTCTCCGATGAATGGTATCAGCCCAGATGATATCAATCTCAAGAGCCTCATGACCCGTCTCATGGATA
GTGAGGTTTCAGAGGTCATCGTAGCAACCAATGCTACAGCAGATGGGGAAGCGACCTCTATGTATCTCTCTCGTCTCCTC
AAGCCAGCTGGGATCAAGGTCACTCGCCTGGCACGAGGCCTAGCCGTGGGAGCAGATATAGAGTATGCGGACGAAGTCAC
ACTCTTACGAGCCATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485