Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8605_RS02880 Genome accession   NZ_AP028358
Coordinates   546422..547072 (-) Length   216 a.a.
NCBI ID   WP_004306726.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10569     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 541422..552072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8605_RS02845 (B10569_05610) - 541799..542803 (+) 1005 WP_079263877.1 hypothetical protein -
  R8605_RS02850 (B10569_05620) tlyA 542800..543561 (+) 762 WP_002931934.1 TlyA family RNA methyltransferase -
  R8605_RS02855 (B10569_05630) ribF 543527..544381 (+) 855 WP_308042685.1 bifunctional riboflavin kinase/FAD synthetase -
  R8605_RS02860 (B10569_05640) cmoA 544368..545078 (+) 711 WP_079263875.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8605_RS02865 (B10569_05650) - 545095..545289 (-) 195 WP_308042713.1 EexN family lipoprotein -
  R8605_RS02870 (B10569_05660) - 545280..545720 (-) 441 WP_308042684.1 EexN family lipoprotein -
  R8605_RS02875 (B10569_05670) - 545779..546411 (-) 633 WP_004306723.1 trimeric intracellular cation channel family protein -
  R8605_RS02880 (B10569_05680) CJE0566 546422..547072 (-) 651 WP_004306726.1 DNA/RNA non-specific endonuclease Regulator
  R8605_RS02885 (B10569_05690) nth 547069..547695 (-) 627 WP_004306729.1 endonuclease III -
  R8605_RS02890 (B10569_05700) peb4 547776..548597 (+) 822 WP_070296586.1 peptidylprolyl isomerase PEB4 -
  R8605_RS02895 (B10569_05710) fbaA 548597..549661 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  R8605_RS02900 (B10569_05720) - 549756..551198 (+) 1443 WP_107701845.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25475.19 Da        Isoelectric Point: 9.8188

>NTDB_id=104720 R8605_RS02880 WP_004306726.1 546422..547072(-) (CJE0566) [Campylobacter jejuni strain BCH-10569]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYNKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=104720 R8605_RS02880 WP_004306726.1 546422..547072(-) (CJE0566) [Campylobacter jejuni strain BCH-10569]
ATGAAAATTTTCATCTTTTTGCTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACTCCGCAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTCCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACAATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment