Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8661_RS03125 Genome accession   NZ_AP028357
Coordinates   605261..606034 (+) Length   257 a.a.
NCBI ID   WP_002859984.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10544     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 600261..611034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8661_RS03110 (B10544_06140) - 601110..603044 (-) 1935 WP_283798917.1 RNB domain-containing ribonuclease -
  R8661_RS03115 (B10544_06150) ilvC 603163..604185 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  R8661_RS03120 (B10544_06160) - 604189..605271 (+) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  R8661_RS03125 (B10544_06170) dprA 605261..606034 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  R8661_RS03130 (B10544_06180) ruvX 606031..606414 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8661_RS03135 (B10544_06190) - 606443..607282 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8661_RS03140 (B10544_06200) msrA 607458..607955 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8661_RS03145 (B10544_06210) ppa 607997..608515 (-) 519 WP_002852138.1 inorganic diphosphatase -
  R8661_RS03150 (B10544_06220) adk 608525..609103 (-) 579 WP_002859580.1 adenylate kinase -
  R8661_RS03155 (B10544_06230) aspS 609100..610851 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.61 Da        Isoelectric Point: 6.4874

>NTDB_id=104694 R8661_RS03125 WP_002859984.1 605261..606034(+) (dprA) [Campylobacter jejuni strain BCH-10544]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104694 R8661_RS03125 WP_002859984.1 605261..606034(+) (dprA) [Campylobacter jejuni strain BCH-10544]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment