Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   R8804_RS05915 Genome accession   NZ_OY754427
Coordinates   1196356..1197093 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate F200     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1191356..1202093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8804_RS05885 (FGAF200_11340) yfiL 1191514..1191879 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  R8804_RS05890 (FGAF200_11350) aroF 1192089..1193159 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  R8804_RS05895 (FGAF200_11360) tyrA 1193170..1194291 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  R8804_RS05900 (FGAF200_11370) pheA 1194334..1195494 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  R8804_RS05905 pheL 1195593..1195640 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  R8804_RS05910 (FGAF200_11380) raiA 1195744..1196085 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  R8804_RS05915 (FGAF200_11390) comL 1196356..1197093 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  R8804_RS05920 (FGAF200_11400) rluD 1197228..1198208 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  R8804_RS05925 (FGAF200_11410) yfiH 1198205..1198936 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  R8804_RS05930 (FGAF200_11420) clpC 1199066..1201639 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1046904 R8804_RS05915 WP_000197686.1 1196356..1197093(-) (comL) [Escherichia coli isolate F200]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1046904 R8804_RS05915 WP_000197686.1 1196356..1197093(-) (comL) [Escherichia coli isolate F200]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376