Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8950_RS03095 Genome accession   NZ_AP028355
Coordinates   594962..595735 (+) Length   257 a.a.
NCBI ID   WP_317727464.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10539     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 589962..600735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8950_RS03080 (B10539_06090) - 590807..592741 (-) 1935 WP_317727463.1 RNB domain-containing ribonuclease -
  R8950_RS03085 (B10539_06100) ilvC 592864..593886 (+) 1023 WP_002825340.1 ketol-acid reductoisomerase -
  R8950_RS03090 (B10539_06110) - 593890..594972 (+) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  R8950_RS03095 (B10539_06120) dprA 594962..595735 (+) 774 WP_317727464.1 DNA-processing protein DprA Machinery gene
  R8950_RS03100 (B10539_06130) ruvX 595732..596115 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8950_RS03105 (B10539_06140) - 596144..596983 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8950_RS03110 (B10539_06150) msrA 597159..597656 (-) 498 WP_317727465.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8950_RS03115 (B10539_06160) ppa 597698..598216 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8950_RS03120 (B10539_06170) adk 598226..598804 (-) 579 WP_002859580.1 adenylate kinase -
  R8950_RS03125 (B10539_06180) aspS 598801..600552 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28804.65 Da        Isoelectric Point: 7.6510

>NTDB_id=104668 R8950_RS03095 WP_317727464.1 594962..595735(+) (dprA) [Campylobacter jejuni strain BCH-10539]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYGNALALSEYEDDYLPKNYDFLLRNRLVIVLSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104668 R8950_RS03095 WP_317727464.1 594962..595735(+) (dprA) [Campylobacter jejuni strain BCH-10539]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGGAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGTTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment