Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   R8859_RS08735 Genome accession   NZ_OY754407
Coordinates   1809051..1809788 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate F247     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1804051..1814788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8859_RS08720 (FGAF247_16660) clpC 1804505..1807078 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  R8859_RS08725 (FGAF247_16670) yfiH 1807208..1807939 (-) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  R8859_RS08730 (FGAF247_16680) rluD 1807936..1808916 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  R8859_RS08735 (FGAF247_16690) comL 1809051..1809788 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  R8859_RS08740 (FGAF247_16700) raiA 1810059..1810400 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  R8859_RS08745 pheL 1810504..1810551 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  R8859_RS08750 (FGAF247_16710) pheA 1810650..1811810 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  R8859_RS08755 (FGAF247_16720) tyrA 1811853..1812974 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  R8859_RS08760 (FGAF247_16730) aroF 1812985..1814055 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  R8859_RS08765 (FGAF247_16740) yfiL 1814265..1814630 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1046576 R8859_RS08735 WP_000197686.1 1809051..1809788(+) (comL) [Escherichia coli isolate F247]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1046576 R8859_RS08735 WP_000197686.1 1809051..1809788(+) (comL) [Escherichia coli isolate F247]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376