Detailed information NTG0104648

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8497_RS05685
• Genome accession: NZ_AP028352
• Coordinates: 1098452..1099411 (+)
• Length: 319 a.a.
• NCBI ID: WP_002875425.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-10518
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1093452..1104411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8497_RS05660 (B10518_11080)	neuC	1094015..1095130 (+)	1116	WP_002858400.1	UDP-N-acetylglucosamine 2-epimerase	-
R8497_RS05665	-	1095127..1096065 (+)	939	Protein_1096	beta-1,4-N-acetylgalactosaminyltransferase	-
R8497_RS05670	-	1096075..1096737 (+)	663	WP_032596875.1	cytidylyltransferase domain-containing protein	-
R8497_RS05675	-	1096732..1097585 (-)	854	Protein_1098	glycosyltransferase	-
R8497_RS05680 (B10518_11120)	waaV	1097569..1098393 (-)	825	WP_002858096.1	glycosyltransferase family 2 protein	-
R8497_RS05685 (B10518_11130)	waaF	1098452..1099411 (+)	960	WP_002875425.1	lipopolysaccharide heptosyltransferase II	Regulator
R8497_RS05690 (B10518_11140)	gmhA	1099392..1099952 (-)	561	WP_002875424.1	D-sedoheptulose 7-phosphate isomerase	-
R8497_RS05695 (B10518_11150)	rfaE1	1099949..1101334 (-)	1386	WP_002858114.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8497_RS05700 (B10518_11160)	rfaD	1101327..1102280 (-)	954	WP_052794327.1	ADP-glyceromanno-heptose 6-epimerase	-
R8497_RS05705 (B10518_11170)	gmhB	1102281..1102841 (-)	561	Protein_1104	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8497_RS05710 (B10518_11180)	-	1102922..1103224 (+)	303	WP_002852762.1	c-type cytochrome	-
R8497_RS05715 (B10518_11190)	ccoS	1103247..1103453 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36734.30 Da
• Isoelectric Point: 10.2412

>NTDB_id=104648 R8497_RS05685 WP_002875425.1 1098452..1099411(+) (waaF) [Campylobacter jejuni strain BCH-10518]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide

• Length: 960 bp

>NTDB_id=104648 R8497_RS05685 WP_002875425.1 1098452..1099411(+) (waaF) [Campylobacter jejuni strain BCH-10518]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	100	100	1