Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8497_RS03110 Genome accession   NZ_AP028352
Coordinates   602948..603721 (+) Length   257 a.a.
NCBI ID   WP_317644754.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10518     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 597948..608721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8497_RS03095 (B10518_06130) - 598797..600731 (-) 1935 WP_070309992.1 RNB domain-containing ribonuclease -
  R8497_RS03100 (B10518_06140) ilvC 600850..601872 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  R8497_RS03105 (B10518_06150) - 601876..602958 (+) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  R8497_RS03110 (B10518_06160) dprA 602948..603721 (+) 774 WP_317644754.1 DNA-processing protein DprA Machinery gene
  R8497_RS03115 (B10518_06170) ruvX 603718..604101 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8497_RS03120 (B10518_06180) - 604130..604969 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8497_RS03125 (B10518_06190) msrA 605144..605641 (-) 498 WP_317644758.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8497_RS03130 (B10518_06200) ppa 605683..606201 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8497_RS03135 (B10518_06210) adk 606211..606789 (-) 579 WP_002859580.1 adenylate kinase -
  R8497_RS03140 (B10518_06220) aspS 606786..608537 (-) 1752 WP_070306881.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28876.67 Da        Isoelectric Point: 6.4874

>NTDB_id=104642 R8497_RS03110 WP_317644754.1 602948..603721(+) (dprA) [Campylobacter jejuni strain BCH-10518]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMVAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104642 R8497_RS03110 WP_317644754.1 602948..603721(+) (dprA) [Campylobacter jejuni strain BCH-10518]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGTAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment