Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8612_RS06000 Genome accession   NZ_AP028351
Coordinates   1174833..1175603 (-) Length   256 a.a.
NCBI ID   WP_002776372.1    Uniprot ID   A0A3H9IIK0
Organism   Campylobacter coli strain BCH-10460     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1169833..1180603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS05970 (B10460_11740) aspS 1169969..1171720 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  R8612_RS05975 (B10460_11750) - 1171717..1172292 (+) 576 WP_002776379.1 adenylate kinase -
  R8612_RS05980 (B10460_11760) ppa 1172302..1172820 (+) 519 WP_002776378.1 inorganic diphosphatase -
  R8612_RS05985 (B10460_11770) msrA 1172868..1173368 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8612_RS05990 (B10460_11780) - 1173591..1174445 (-) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8612_RS05995 (B10460_11790) ruvX 1174456..1174836 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  R8612_RS06000 (B10460_11800) dprA 1174833..1175603 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  R8612_RS06005 (B10460_11810) - 1175593..1176645 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  R8612_RS06010 (B10460_11820) ilvC 1176648..1177670 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  R8612_RS06015 (B10460_11830) - 1177793..1179727 (+) 1935 WP_052784744.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28943.38 Da        Isoelectric Point: 5.2618

>NTDB_id=104630 R8612_RS06000 WP_002776372.1 1174833..1175603(-) (dprA) [Campylobacter coli strain BCH-10460]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=104630 R8612_RS06000 WP_002776372.1 1174833..1175603(-) (dprA) [Campylobacter coli strain BCH-10460]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9IIK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment