Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   R8612_RS01580 Genome accession   NZ_AP028351
Coordinates   315963..316559 (+) Length   198 a.a.
NCBI ID   WP_002804867.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10460     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310963..321559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS01565 (B10460_03030) ctsR 313670..313981 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8612_RS01570 (B10460_03040) ctsD 313959..315377 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8612_RS01575 (B10460_03050) ctsP 315370..315966 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  R8612_RS01580 (B10460_03060) ctsX 315963..316559 (+) 597 WP_002804867.1 CDC27 family protein Machinery gene
  R8612_RS01585 (B10460_03070) ctsE 316552..318114 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  R8612_RS01590 (B10460_03080) ctsF 318101..319276 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  R8612_RS01595 (B10460_03090) - 319273..320037 (-) 765 WP_002784060.1 TSUP family transporter -
  R8612_RS01600 (B10460_03100) - 320040..320804 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23788.26 Da        Isoelectric Point: 5.2295

>NTDB_id=104612 R8612_RS01580 WP_002804867.1 315963..316559(+) (ctsX) [Campylobacter coli strain BCH-10460]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIVCMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=104612 R8612_RS01580 WP_002804867.1 315963..316559(+) (ctsX) [Campylobacter coli strain BCH-10460]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGTATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterproScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

52.332

97.475

0.51

Multiple sequence alignment