Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8612_RS01565 Genome accession   NZ_AP028351
Coordinates   313670..313981 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain BCH-10460     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308670..318981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS01555 (B10460_03010) - 309344..309982 (+) 639 WP_002785868.1 HAD family hydrolase -
  R8612_RS01560 (B10460_03020) nifJ 310086..313646 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8612_RS01565 (B10460_03030) ctsR 313670..313981 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8612_RS01570 (B10460_03040) ctsD 313959..315377 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8612_RS01575 (B10460_03050) ctsP 315370..315966 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  R8612_RS01580 (B10460_03060) ctsX 315963..316559 (+) 597 WP_002804867.1 CDC27 family protein Machinery gene
  R8612_RS01585 (B10460_03070) ctsE 316552..318114 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=104609 R8612_RS01565 WP_002779316.1 313670..313981(+) (ctsR) [Campylobacter coli strain BCH-10460]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104609 R8612_RS01565 WP_002779316.1 313670..313981(+) (ctsR) [Campylobacter coli strain BCH-10460]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment