Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   R8561_RS07420 Genome accession   NZ_AP028350
Coordinates   1442762..1444180 (-) Length   472 a.a.
NCBI ID   WP_002779315.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10420     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1437762..1449180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS07395 (B10420_14530) - 1438102..1438866 (+) 765 WP_002781157.1 TSUP family transporter -
  R8561_RS07400 (B10420_14540) ctsF 1438863..1440038 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  R8561_RS07405 (B10420_14550) ctsE 1440025..1441587 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  R8561_RS07410 (B10420_14560) - 1441580..1442176 (-) 597 WP_002779313.1 CDC27 family protein -
  R8561_RS07415 (B10420_14570) ctsP 1442173..1442769 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  R8561_RS07420 (B10420_14580) ctsD 1442762..1444180 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8561_RS07425 (B10420_14590) ctsR 1444158..1444469 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8561_RS07430 (B10420_14600) nifJ 1444493..1448053 (-) 3561 WP_023890549.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8561_RS07435 (B10420_14610) - 1448157..1448795 (-) 639 WP_002781164.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53513.05 Da        Isoelectric Point: 6.5150

>NTDB_id=104604 R8561_RS07420 WP_002779315.1 1442762..1444180(-) (ctsD) [Campylobacter coli strain BCH-10420]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=104604 R8561_RS07420 WP_002779315.1 1442762..1444180(-) (ctsD) [Campylobacter coli strain BCH-10420]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGTCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGATCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACTCCAAGCA
TAGTAGACAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

80.72

100

0.807

Multiple sequence alignment