Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8561_RS03200 Genome accession   NZ_AP028350
Coordinates   626677..627447 (+) Length   256 a.a.
NCBI ID   WP_004284970.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10420     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 621677..632447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS03185 (B10420_06220) - 622574..624508 (-) 1935 WP_065987987.1 ribonuclease R family protein -
  R8561_RS03190 (B10420_06230) ilvC 624631..625653 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  R8561_RS03195 (B10420_06240) - 625656..626687 (+) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  R8561_RS03200 (B10420_06250) dprA 626677..627447 (+) 771 WP_004284970.1 DNA-processing protein DprA Machinery gene
  R8561_RS03205 (B10420_06260) ruvX 627444..627824 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  R8561_RS03210 (B10420_06270) - 627835..628689 (+) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8561_RS03215 (B10420_06280) msrA 628912..629412 (-) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8561_RS03220 (B10420_06290) ppa 629460..629978 (-) 519 WP_002776378.1 inorganic diphosphatase -
  R8561_RS03225 (B10420_06300) - 629988..630563 (-) 576 WP_002781658.1 adenylate kinase -
  R8561_RS03230 (B10420_06310) aspS 630560..632311 (-) 1752 WP_023890629.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28943.38 Da        Isoelectric Point: 5.2618

>NTDB_id=104588 R8561_RS03200 WP_004284970.1 626677..627447(+) (dprA) [Campylobacter coli strain BCH-10420]
MQSEIPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=104588 R8561_RS03200 WP_004284970.1 626677..627447(+) (dprA) [Campylobacter coli strain BCH-10420]
ATGCAAAGTGAAATACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATTAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.177

96.875

0.457

Multiple sequence alignment