Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8924_RS06990 Genome accession   NZ_AP028348
Coordinates   1360586..1361101 (-) Length   171 a.a.
NCBI ID   WP_002875272.1    Uniprot ID   A0A5T0KSE7
Organism   Campylobacter jejuni strain BCH-10403     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1355586..1366101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8924_RS06975 (B10403_13790) - 1355695..1357512 (-) 1818 WP_317725649.1 motility associated factor glycosyltransferase family protein -
  R8924_RS06980 (B10403_13800) - 1357509..1359332 (-) 1824 WP_317719080.1 motility associated factor glycosyltransferase family protein -
  R8924_RS06985 (B10403_13810) - 1359342..1360586 (-) 1245 WP_002934876.1 DUF2920 family protein -
  R8924_RS06990 (B10403_13820) ctsG 1360586..1361101 (-) 516 WP_002875272.1 type II secretion system protein Machinery gene
  R8924_RS06995 (B10403_13830) tsaD 1361102..1362109 (-) 1008 WP_071169875.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8924_RS07000 (B10403_13840) - 1362106..1363500 (-) 1395 WP_002909663.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8924_RS07005 (B10403_13850) dxr 1363502..1364572 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8924_RS07010 (B10403_13860) cdsA 1364569..1365294 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8924_RS07015 (B10403_13870) - 1365303..1365641 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18650.51 Da        Isoelectric Point: 6.4682

>NTDB_id=104575 R8924_RS06990 WP_002875272.1 1360586..1361101(-) (ctsG) [Campylobacter jejuni strain BCH-10403]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104575 R8924_RS06990 WP_002875272.1 1360586..1361101(-) (ctsG) [Campylobacter jejuni strain BCH-10403]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0KSE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment