Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8924_RS03060 Genome accession   NZ_AP028348
Coordinates   589742..590515 (+) Length   257 a.a.
NCBI ID   WP_002859984.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10403     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 584742..595515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8924_RS03045 (B10403_06000) - 585591..587525 (-) 1935 WP_002852122.1 RNB domain-containing ribonuclease -
  R8924_RS03050 (B10403_06010) ilvC 587644..588666 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  R8924_RS03055 (B10403_06020) - 588670..589752 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  R8924_RS03060 (B10403_06030) dprA 589742..590515 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  R8924_RS03065 (B10403_06040) ruvX 590512..590895 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8924_RS03070 (B10403_06050) - 590924..591763 (+) 840 WP_317719104.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8924_RS03075 (B10403_06060) msrA 591938..592435 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8924_RS03080 (B10403_06070) ppa 592477..592995 (-) 519 WP_002852138.1 inorganic diphosphatase -
  R8924_RS03085 (B10403_06080) adk 593005..593583 (-) 579 WP_002859580.1 adenylate kinase -
  R8924_RS03090 (B10403_06090) aspS 593580..595331 (-) 1752 WP_032586472.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.61 Da        Isoelectric Point: 6.4874

>NTDB_id=104565 R8924_RS03060 WP_002859984.1 589742..590515(+) (dprA) [Campylobacter jejuni strain BCH-10403]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104565 R8924_RS03060 WP_002859984.1 589742..590515(+) (dprA) [Campylobacter jejuni strain BCH-10403]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment