Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACI6O7_RS06310 Genome accession   NZ_OY725152
Coordinates   1279032..1279622 (-) Length   196 a.a.
NCBI ID   WP_404378105.1    Uniprot ID   -
Organism   Lactococcus lactis strain IMDO WA12L8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1274032..1284622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O7_RS06300 (LLWA12L8_FAMOGCFE_01275) trmFO 1276027..1277370 (+) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACI6O7_RS06305 (LLWA12L8_FAMOGCFE_01276) xerS 1277415..1278485 (-) 1071 WP_404378104.1 tyrosine recombinase XerS Machinery gene
  ACI6O7_RS06310 (LLWA12L8_FAMOGCFE_01277) xerS 1279032..1279622 (-) 591 WP_404378105.1 tyrosine-type recombinase/integrase Machinery gene
  ACI6O7_RS06315 (LLWA12L8_FAMOGCFE_01278) - 1279612..1280085 (-) 474 WP_404378106.1 hypothetical protein -
  ACI6O7_RS06320 (LLWA12L8_FAMOGCFE_01279) - 1280765..1281556 (-) 792 WP_025017078.1 hypothetical protein -
  ACI6O7_RS06325 (LLWA12L8_FAMOGCFE_01280) - 1281575..1282045 (-) 471 WP_404378107.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI6O7_RS06330 recA 1282305..1282457 (-) 153 WP_332297123.1 hypothetical protein Machinery gene
  ACI6O7_RS06335 (LLWA12L8_FAMOGCFE_01281) recA 1282481..1282786 (-) 306 WP_023189241.1 RecA protein Machinery gene
  ACI6O7_RS06340 recA 1282860..1282994 (-) 135 WP_023189240.1 RecA protein Machinery gene
  ACI6O7_RS06345 (LLWA12L8_FAMOGCFE_01282) - 1283370..1284581 (-) 1212 WP_081213518.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22402.50 Da        Isoelectric Point: 9.8351

>NTDB_id=1045606 ACI6O7_RS06310 WP_404378105.1 1279032..1279622(-) (xerS) [Lactococcus lactis strain IMDO WA12L8]
MEGKLFLGDETRAFLEFVEQDYEKSVSNRAKTSFKKNKKRDLAILSFFLSSGLRCAELVGINFNDLNLETGKVSVMRKEG
KKDVVPIAHFSHKYITDYYEARSSLNTDVEALFITDYNQTIRKISNASINKLVAKYSEAYKVRVTPHTRHTFATRLYNVS
HSQVLVSNQLEHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1045606 ACI6O7_RS06310 WP_404378105.1 1279032..1279622(-) (xerS) [Lactococcus lactis strain IMDO WA12L8]
TTGGAAGGTAAACTATTCCTAGGAGATGAAACCAGAGCCTTTTTAGAATTTGTTGAGCAAGACTACGAGAAGTCTGTCAG
TAATCGTGCGAAAACAAGTTTCAAAAAAAATAAAAAAAGAGATTTAGCCATACTAAGCTTCTTTTTATCTTCTGGGTTAC
GTTGTGCGGAACTTGTAGGGATCAATTTCAATGATTTAAACCTTGAAACTGGGAAAGTGAGTGTGATGCGAAAAGAAGGA
AAGAAGGATGTAGTGCCAATTGCTCATTTTTCGCATAAATATATAACAGATTATTATGAGGCAAGAAGTAGCTTAAATAC
TGATGTAGAAGCTTTATTTATCACGGACTATAATCAAACAATTAGAAAAATTTCTAATGCATCGATAAATAAGCTAGTCG
CAAAGTATTCAGAAGCCTATAAAGTTAGAGTAACCCCTCATACTAGGCATACATTCGCAACAAGGCTCTATAATGTCAGT
CACTCTCAAGTCCTTGTCAGCAACCAATTAGAACATTCTTCAACCAAACCAACTGAGTTATATACCCATATTGTCAGTGC
TGAAGCTAAAGATGCGTTAAGAAAGTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(30-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

50.249

100

0.515

Multiple sequence alignment