Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACERCD_RS04350 | Genome accession | NZ_CP168756 |
| Coordinates | 927807..928226 (+) | Length | 139 a.a. |
| NCBI ID | WP_021339937.1 | Uniprot ID | - |
| Organism | Staphylococcus equorum strain SN42 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 922807..933226
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACERCD_RS04320 (ACERCD_04320) | atpD | 922844..924256 (+) | 1413 | WP_021339775.1 | F0F1 ATP synthase subunit beta | - |
| ACERCD_RS04325 (ACERCD_04325) | - | 924276..924680 (+) | 405 | WP_002507082.1 | F0F1 ATP synthase subunit epsilon | - |
| ACERCD_RS04330 (ACERCD_04330) | - | 925004..925237 (+) | 234 | WP_002507083.1 | DUF1146 family protein | - |
| ACERCD_RS04335 (ACERCD_04335) | murA | 925344..926609 (+) | 1266 | WP_021339774.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACERCD_RS04340 (ACERCD_04340) | fabZ | 926667..927107 (+) | 441 | WP_002507085.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACERCD_RS04345 (ACERCD_04345) | - | 927176..927616 (-) | 441 | WP_002507086.1 | YwpF-like family protein | - |
| ACERCD_RS04350 (ACERCD_04350) | ssb | 927807..928226 (+) | 420 | WP_021339937.1 | single-stranded DNA-binding protein | Machinery gene |
| ACERCD_RS04355 (ACERCD_04355) | - | 928710..929390 (+) | 681 | WP_002507088.1 | transglycosylase family protein | - |
| ACERCD_RS04360 (ACERCD_04360) | tenA | 929780..930469 (+) | 690 | WP_021339938.1 | thiaminase II | - |
| ACERCD_RS04365 (ACERCD_04365) | thiD | 930462..931283 (+) | 822 | WP_021339939.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACERCD_RS04370 (ACERCD_04370) | thiM | 931276..932067 (+) | 792 | WP_031266140.1 | hydroxyethylthiazole kinase | - |
| ACERCD_RS04375 (ACERCD_04375) | thiE | 932067..932705 (+) | 639 | WP_021339941.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 16259.49 Da Isoelectric Point: 4.8624
>NTDB_id=1045554 ACERCD_RS04350 WP_021339937.1 927807..928226(+) (ssb) [Staphylococcus equorum strain SN42]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV
Nucleotide
Download Length: 420 bp
>NTDB_id=1045554 ACERCD_RS04350 WP_021339937.1 927807..928226(+) (ssb) [Staphylococcus equorum strain SN42]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
60.87 |
99.281 |
0.604 |
| ssb | Staphylococcus aureus MW2 |
60.145 |
99.281 |
0.597 |