Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   ACERCD_RS00195 Genome accession   NZ_CP168756
Coordinates   45939..47288 (-) Length   449 a.a.
NCBI ID   WP_040030082.1    Uniprot ID   -
Organism   Staphylococcus equorum strain SN42     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40939..52288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACERCD_RS00165 (ACERCD_00165) - 42023..42244 (-) 222 WP_210128170.1 hypothetical protein -
  ACERCD_RS00170 (ACERCD_00170) - 42450..42533 (-) 84 Protein_31 DNA repair protein RadC -
  ACERCD_RS00175 (ACERCD_00175) - 42553..43059 (-) 507 WP_210128171.1 DUF1643 domain-containing protein -
  ACERCD_RS00180 (ACERCD_00180) - 43073..43384 (-) 312 WP_210128175.1 DUF960 family protein -
  ACERCD_RS00185 (ACERCD_00185) - 43480..43818 (-) 339 WP_040030080.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ACERCD_RS00190 (ACERCD_00190) ccrB 44292..45917 (-) 1626 WP_145373003.1 cassette chromosome recombinase CcrB Machinery gene
  ACERCD_RS00195 (ACERCD_00195) ccrA 45939..47288 (-) 1350 WP_040030082.1 cassette chromosome recombinase CcrA Machinery gene
  ACERCD_RS00200 (ACERCD_00200) - 47466..47723 (-) 258 WP_002434121.1 hypothetical protein -
  ACERCD_RS00205 (ACERCD_00205) cch1 47788..49578 (-) 1791 WP_210127845.1 cassette chromosome replicative helicase -
  ACERCD_RS00210 (ACERCD_00210) - 49578..49847 (-) 270 WP_031838353.1 hypothetical protein -
  ACERCD_RS00215 (ACERCD_00215) - 50002..51561 (-) 1560 WP_210127844.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52328.94 Da        Isoelectric Point: 9.9834

>NTDB_id=1045548 ACERCD_RS00195 WP_040030082.1 45939..47288(-) (ccrA) [Staphylococcus equorum strain SN42]
MKQAMGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKLITTHAPFGYHYH
NGTFTIDTVKSPTVKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKTDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAI
CQDFFQNQQLYSKINHTIQQRLKRQRDVETKTTLNHEQLIEKLAQGKIDAETFREQTRSLHQQSKPLSSISAYQIRNAFQ
NIIQQRFTLNMLNPYIDVISITKNKTLAGIYFKNEPLNIVNQTTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1045548 ACERCD_RS00195 WP_040030082.1 45939..47288(-) (ccrA) [Staphylococcus equorum strain SN42]
ATGAAACAAGCAATGGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGT
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAGGGACAATGTGACGTATTATGTTGCTATCGTCTAAATCGACTTCATCGTAAT
TTGAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAACTGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAATCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTCATTAATCGCAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAACCAACTCAAACAAAAAATCAA
ATGTCCCTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAAACAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAATGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGATT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TGTAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCGTTCATTACATCAACAATCAAAACCTTTATCATCAATCAGTGCGTATCAAATTCGAAATGCTTTCCAA
AACATCATTCAACAACGTTTCACACTAAACATGCTGAATCCCTATATTGATGTAATTAGTATTACTAAAAACAAAACCCT
TGCGGGGATCTATTTCAAAAATGAACCTCTAAACATTGTCAATCAAACGACGCAATCATCGATTGCTTAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

92.65

100

0.927
  ccrA Staphylococcus aureus N315

74.833

100

0.748

Multiple sequence alignment