Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   ACERCD_RS00190 Genome accession   NZ_CP168756
Coordinates   44292..45917 (-) Length   541 a.a.
NCBI ID   WP_145373003.1    Uniprot ID   -
Organism   Staphylococcus equorum strain SN42     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39292..50917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACERCD_RS00165 (ACERCD_00165) - 42023..42244 (-) 222 WP_210128170.1 hypothetical protein -
  ACERCD_RS00170 (ACERCD_00170) - 42450..42533 (-) 84 Protein_31 DNA repair protein RadC -
  ACERCD_RS00175 (ACERCD_00175) - 42553..43059 (-) 507 WP_210128171.1 DUF1643 domain-containing protein -
  ACERCD_RS00180 (ACERCD_00180) - 43073..43384 (-) 312 WP_210128175.1 DUF960 family protein -
  ACERCD_RS00185 (ACERCD_00185) - 43480..43818 (-) 339 WP_040030080.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ACERCD_RS00190 (ACERCD_00190) ccrB 44292..45917 (-) 1626 WP_145373003.1 cassette chromosome recombinase CcrB Machinery gene
  ACERCD_RS00195 (ACERCD_00195) ccrA 45939..47288 (-) 1350 WP_040030082.1 cassette chromosome recombinase CcrA Machinery gene
  ACERCD_RS00200 (ACERCD_00200) - 47466..47723 (-) 258 WP_002434121.1 hypothetical protein -
  ACERCD_RS00205 (ACERCD_00205) cch1 47788..49578 (-) 1791 WP_210127845.1 cassette chromosome replicative helicase -
  ACERCD_RS00210 (ACERCD_00210) - 49578..49847 (-) 270 WP_031838353.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62113.00 Da        Isoelectric Point: 9.7113

>NTDB_id=1045547 ACERCD_RS00190 WP_145373003.1 44292..45917(-) (ccrB) [Staphylococcus equorum strain SN42]
MNEMKKKRIGAYIRVSTERQVEGYSIDGQITQIEQFCQFNGYDLVDIYADRGISGKSMNRPALQRMLQDAKNGKLDCVIV
YKINRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLLLNILASFSEFERNTILENIYTGQHQRALEGYYQGNI
PLGYSNIPDNKKELMINQHEANIVNYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHSPIIGKDLWDKVQARKKQVSKKPQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQIDVASLNHDIAYKQQQFDE
INTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQINQLKHQQNQEKPSYDTKQIAALLQQIFQNVESMDKAQLKA
LYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=1045547 ACERCD_RS00190 WP_145373003.1 44292..45917(-) (ccrB) [Staphylococcus equorum strain SN42]
ATGAATGAAATGAAGAAGAAGAGAATCGGAGCGTACATTCGCGTGTCCACAGAGAGACAAGTGGAAGGTTATAGTATAGA
TGGTCAAATTACACAAATAGAGCAGTTTTGCCAATTTAATGGTTATGACCTCGTTGATATATACGCAGATCGGGGTATTT
CTGGAAAATCTATGAATCGCCCTGCACTACAGCGCATGTTACAAGACGCAAAAAATGGAAAGTTAGACTGTGTGATTGTT
TATAAAATAAATCGTTTAGCACGTAATACTTCTGACTTACTGACAATCGTCGAAGAACTACATCGTCAAAATGTTGAATT
TTTCAGCTTGTCTGAACGCATGGAAGTCAAAAATTCGACAGGTAAATTATTATTAAATATACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACCATTTTAGAGAATATTTACACCGGACAGCATCAAAGAGCCTTAGAAGGCTATTATCAAGGCAATATT
CCTTTAGGATATTCTAATATACCTGATAATAAAAAAGAATTAATGATTAACCAACATGAAGCCAATATTGTGAACTATAT
CTTTGAATCATACGCCAAAGGTCATGGATATCGTAAAATTGCCAATGCACTCAACCATAAAGGATATGTAACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAATCCATTCTATATTGGTAAAATCCAATTCGCGAAATAC
AAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAGCCAGTAATCGCTGAAGGTAAGCACTCCCCTATTATTGG
CAAAGACTTATGGGATAAAGTCCAAGCACGTAAGAAGCAAGTAAGCAAAAAGCCACAGGTACATGGTAAAGGGACAAATC
TGTTAACTGGAATAATTTTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAACACACTCAAAGACGGT
ACTAAAAAACGCATTCGGTATTATTCATGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGTTAG
AGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTCGAAATAGTCAAAAGTGATAAAGTTCTCAAGCAAGTTGTCG
AACGTGTTAATCAAGAAAATCAAATCGATGTAGCTTCACTTAACCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTGAATGACATTACAAATCAAATTAATCAGCTCAAGCACCAACAAAACCAAGAAAAACCATCTT
ACGATACGAAGCAAATCGCTGCCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGATAAAGCACAACTCAAAGCA
TTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAAACT
CAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTGC
CTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterProScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(294-359)

Recombinase (Recombinase)

(179-279)

Resolvase, N terminal domain (Resolvase)

(11-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

78.229

100

0.784

Multiple sequence alignment