Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8906_RS03025 Genome accession   NZ_AP028346
Coordinates   577303..578076 (+) Length   257 a.a.
NCBI ID   WP_002918419.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10335     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 572303..583076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8906_RS03010 (B10335_05980) - 573152..575086 (-) 1935 WP_002870085.1 RNB domain-containing ribonuclease -
  R8906_RS03015 (B10335_05990) ilvC 575205..576227 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  R8906_RS03020 (B10335_06000) - 576231..577313 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  R8906_RS03025 (B10335_06010) dprA 577303..578076 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  R8906_RS03030 (B10335_06020) ruvX 578073..578456 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX -
  R8906_RS03035 (B10335_06030) - 578485..579324 (+) 840 WP_079460160.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8906_RS03040 (B10335_06040) msrA 579501..579998 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8906_RS03045 (B10335_06050) ppa 580040..580558 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8906_RS03050 (B10335_06060) adk 580568..581146 (-) 579 WP_002859580.1 adenylate kinase -
  R8906_RS03055 (B10335_06070) aspS 581143..582894 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28919.74 Da        Isoelectric Point: 7.7211

>NTDB_id=104538 R8906_RS03025 WP_002918419.1 577303..578076(+) (dprA) [Campylobacter jejuni strain BCH-10335]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNRVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104538 R8906_RS03025 WP_002918419.1 577303..578076(+) (dprA) [Campylobacter jejuni strain BCH-10335]
ATGGCAAGTGAAATTTTGCCTGATGAGTTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATCGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment