Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   ACEN40_RS06810 Genome accession   NZ_CP168724
Coordinates   1319539..1320162 (+) Length   207 a.a.
NCBI ID   WP_158334372.1    Uniprot ID   -
Organism   Campylobacter bilis strain 64     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314539..1325162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN40_RS06790 (ACEN40_06790) - 1315475..1316839 (-) 1365 WP_158334279.1 MotA/TolQ/ExbB proton channel family protein -
  ACEN40_RS06795 (ACEN40_06795) fbaA 1316925..1317989 (-) 1065 WP_158334278.1 class II fructose-bisphosphate aldolase -
  ACEN40_RS06800 (ACEN40_06800) - 1317989..1318810 (-) 822 WP_158334277.1 peptidylprolyl isomerase -
  ACEN40_RS06805 (ACEN40_06805) nth 1318892..1319512 (+) 621 WP_158334276.1 endonuclease III -
  ACEN40_RS06810 (ACEN40_06810) CJE0566 1319539..1320162 (+) 624 WP_158334372.1 DNA/RNA non-specific endonuclease Regulator
  ACEN40_RS06815 (ACEN40_06815) - 1320172..1320804 (+) 633 WP_158334275.1 trimeric intracellular cation channel family protein -
  ACEN40_RS06820 (ACEN40_06820) - 1320863..1321300 (+) 438 WP_158334274.1 EexN family lipoprotein -
  ACEN40_RS06825 (ACEN40_06825) - 1321297..1321512 (+) 216 WP_158334273.1 EexN family lipoprotein -
  ACEN40_RS06830 (ACEN40_06830) cmoA 1321502..1322212 (-) 711 WP_158334272.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  ACEN40_RS06835 (ACEN40_06835) - 1322199..1323053 (-) 855 WP_158334271.1 bifunctional riboflavin kinase/FAD synthetase -
  ACEN40_RS06840 (ACEN40_06840) - 1323019..1323780 (-) 762 WP_158334270.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 24415.16 Da        Isoelectric Point: 10.2054

>NTDB_id=1045291 ACEN40_RS06810 WP_158334372.1 1319539..1320162(+) (CJE0566) [Campylobacter bilis strain 64]
MSLKIFAFDAYKPSSDFSSYFDLKHCSVVLNKFFYLNCYDYKLKGTKAIAYKLEAKNLQTKQIKKHPRFEEDTNISKKYR
STYNDYKNTPYTRGHVAPNGSFSFSKAAQNSVFLMSNITPQNAQINNKIWNKIEQRERNLALKFKSIEVLNLVLYSKNPK
YIKKRIAIPSAYIKIIKTPYFKECYQAPNHEVHNENIKHYKINCDKF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1045291 ACEN40_RS06810 WP_158334372.1 1319539..1320162(+) (CJE0566) [Campylobacter bilis strain 64]
TTGTCTTTAAAAATTTTTGCCTTTGATGCTTATAAGCCTAGTAGTGATTTTTCTTCTTATTTTGATCTTAAACACTGTTC
TGTAGTTTTAAATAAATTTTTTTATTTAAATTGTTATGATTATAAACTCAAAGGCACTAAGGCTATAGCTTACAAATTAG
AGGCTAAAAACCTACAAACAAAACAAATCAAAAAACACCCCCGTTTTGAAGAAGACACAAATATCTCTAAAAAATACCGC
AGCACATACAATGATTACAAAAATACCCCTTACACACGCGGGCATGTCGCACCCAATGGTTCTTTTAGCTTTAGCAAAGC
TGCACAAAACTCAGTATTTTTAATGAGTAATATCACCCCACAAAATGCACAAATTAATAATAAAATTTGGAATAAAATCG
AACAAAGAGAAAGAAATCTAGCCTTAAAATTTAAAAGTATTGAAGTTTTAAATCTAGTACTTTATAGCAAAAACCCCAAA
TATATCAAAAAACGCATTGCCATCCCAAGTGCTTATATTAAGATCATTAAAACCCCTTATTTTAAAGAATGTTACCAAGC
CCCCAATCACGAAGTTCATAACGAAAACATCAAACACTATAAAATCAATTGCGATAAGTTCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(21-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

63.5

96.618

0.614
  CJE1441 Campylobacter jejuni RM1221

63

96.618

0.609

Multiple sequence alignment