Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   ACEN40_RS04385 Genome accession   NZ_CP168724
Coordinates   846236..847195 (-) Length   319 a.a.
NCBI ID   WP_158334092.1    Uniprot ID   -
Organism   Campylobacter bilis strain 64     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 841236..852195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN40_RS04360 (ACEN40_04360) gmhA 841669..842229 (+) 561 WP_158334088.1 D-sedoheptulose 7-phosphate isomerase -
  ACEN40_RS04365 (ACEN40_04365) - 842315..842995 (-) 681 WP_158334089.1 cytidylyltransferase domain-containing protein -
  ACEN40_RS04370 (ACEN40_04370) neuC 843078..844196 (-) 1119 WP_203121127.1 UDP-N-acetylglucosamine 2-epimerase -
  ACEN40_RS04375 (ACEN40_04375) - 844193..845233 (-) 1041 WP_158334090.1 N-acetylneuraminate synthase family protein -
  ACEN40_RS04380 (ACEN40_04380) - 845221..846117 (-) 897 WP_158334091.1 alpha-2,3-sialyltransferase -
  ACEN40_RS04385 (ACEN40_04385) waaF 846236..847195 (-) 960 WP_158334092.1 glycosyltransferase family 9 protein Regulator
  ACEN40_RS04390 (ACEN40_04390) - 847254..848078 (+) 825 WP_158334093.1 glycosyltransferase family 2 protein -
  ACEN40_RS04395 (ACEN40_04395) - 848062..848895 (+) 834 WP_158334094.1 glycosyltransferase -
  ACEN40_RS04400 (ACEN40_04400) - 849032..849974 (+) 943 Protein_848 glycosyltransferase family 2 protein -
  ACEN40_RS04405 (ACEN40_04405) - 849945..850994 (-) 1050 Protein_849 beta-1,4-N-acetylgalactosaminyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36595.32 Da        Isoelectric Point: 10.3616

>NTDB_id=1045287 ACEN40_RS04385 WP_158334092.1 846236..847195(-) (waaF) [Campylobacter bilis strain 64]
MKIFIHLPTWLGDAVMASAALYGVYERFKNAHFILYGSLASTALFKEFPNAQIIIEEKKTRYKQALSLRKTLGKIDLGIS
FRSALSSKIILHMLKIKQRYFFNKYRFKEEHQVLKYLYFIENSLHYKINSQALKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDANYFAEVALNFSKTHEVLIFGAGKTEQELCDEIFNILKEKNIKVKNLCNKTTIKTLCQNIAFCDIFITNDS
GPMHISTVYKVKTVAIFGPTKFTQTSPWQNKNAQLAHLNLDCMPCMQKICPLKHHKCMKDLNPKIVIKKAQNIISNSMI

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1045287 ACEN40_RS04385 WP_158334092.1 846236..847195(-) (waaF) [Campylobacter bilis strain 64]
ATGAAAATTTTTATCCATCTTCCCACTTGGTTAGGCGATGCTGTTATGGCTTCAGCAGCTTTATATGGAGTTTATGAACG
TTTTAAAAACGCGCATTTTATACTGTATGGATCTTTAGCATCAACAGCACTTTTTAAAGAATTTCCCAATGCACAAATCA
TTATAGAAGAAAAAAAAACGCGTTATAAACAAGCTTTAAGCTTACGCAAAACATTAGGTAAAATCGACCTTGGCATTTCT
TTTAGATCAGCTTTATCTTCTAAGATCATTTTACACATGCTTAAAATCAAGCAAAGATATTTTTTTAATAAATATAGATT
TAAAGAAGAACACCAAGTTTTAAAATATCTTTATTTCATAGAAAATTCCCTTCATTATAAAATAAACTCTCAAGCATTAA
AACTTCCTTTTAAATTAAAATTTCAAAGCCCTTTAGTATTAAAAAACGGCAAAAAAATCCTAGGTCTAAACCCAGGAGCT
AGTTTTGGAAGTGCTAAAAGATGGGATGCAAATTATTTTGCTGAGGTGGCTTTAAATTTTTCCAAAACCCATGAAGTTTT
AATCTTTGGAGCAGGTAAAACCGAACAAGAACTTTGCGATGAAATTTTTAATATCCTAAAAGAAAAAAACATCAAAGTTA
AAAATCTTTGCAATAAAACTACTATCAAAACACTTTGTCAAAACATTGCTTTTTGTGATATTTTTATCACAAATGATAGT
GGCCCTATGCATATTAGCACTGTTTACAAGGTCAAAACTGTGGCTATTTTTGGCCCGACAAAATTCACCCAAACCTCGCC
ATGGCAAAACAAAAATGCACAATTAGCCCATTTAAATCTCGATTGCATGCCCTGTATGCAAAAAATTTGCCCTTTAAAAC
ACCATAAATGCATGAAAGATTTAAATCCCAAAATAGTTATAAAAAAAGCACAAAACATCATCAGTAATTCTATGATTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(107-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.997

100

0.79

Multiple sequence alignment