Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEPST_RS05625 Genome accession   NZ_CP168704
Coordinates   1166349..1166915 (-) Length   188 a.a.
NCBI ID   WP_204120635.1    Uniprot ID   -
Organism   Levilactobacillus sp. FUA 3915     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1161349..1171915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPST_RS05605 - 1161956..1163563 (+) 1608 WP_204120632.1 peptide ABC transporter substrate-binding protein -
  ACEPST_RS05610 - 1163841..1165028 (+) 1188 WP_204120633.1 metal-dependent hydrolase family protein -
  ACEPST_RS05615 - 1165095..1165937 (-) 843 WP_204120634.1 hypothetical protein -
  ACEPST_RS05620 rpsR 1166081..1166320 (-) 240 WP_048733694.1 30S ribosomal protein S18 -
  ACEPST_RS05625 ssb 1166349..1166915 (-) 567 WP_204120635.1 single-stranded DNA-binding protein Machinery gene
  ACEPST_RS05630 rpsF 1166951..1167247 (-) 297 WP_203640007.1 30S ribosomal protein S6 -
  ACEPST_RS05635 - 1167716..1168330 (-) 615 WP_395390567.1 helix-turn-helix domain-containing protein -
  ACEPST_RS05640 gyrA 1168623..1171145 (-) 2523 WP_203646681.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20513.05 Da        Isoelectric Point: 4.7492

>NTDB_id=1045106 ACEPST_RS05625 WP_204120635.1 1166349..1166915(-) (ssb) [Levilactobacillus sp. FUA 3915]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNKSGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVEDFSFLEPRSRNANNDGGNYNGGSANNAPQQNQNQNANPYTSGNTASAAPTQNTNPNPVNNNQ
GNAGNNNSADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1045106 ACEPST_RS05625 WP_204120635.1 1166349..1166915(-) (ssb) [Levilactobacillus sp. FUA 3915]
ATGATCAACCGAGTAGTACTTACTGGCCGACTGACACGGGATGTTGACTTACGTTATACCCAAGGCGGTGCTGCTGTTGC
CACCTTTACGCTGGCTGTTGATCGGCGGTTCACCAACAAATCTGGTGAACGGGAAGCTGATTTCGTAAGTTGCGTCATCT
GGCGCAAGTCCGCGGAAAACTTTGCTAACTTCTTCCACAAGGGTTCCCTTGTCGGAATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAAGGCCAACGTGTTTACGTGACCGAAGTTGTCGTCGAGGACTTTTCATTCCTTGAACCGCGTTC
TCGCAACGCCAACAACGACGGTGGTAACTACAATGGTGGTTCCGCGAATAATGCTCCTCAGCAAAATCAGAATCAAAATG
CCAACCCGTACACGAGTGGGAACACAGCTTCGGCTGCCCCAACTCAAAATACGAACCCGAACCCGGTCAACAACAATCAG
GGGAACGCTGGGAACAATAACTCAGCCGATCCGTTTGCGAACTCCGGCGATTCAATTGACATTTCAGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.106

100

0.601
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.447

100

0.574

Multiple sequence alignment