Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   R8917_RS02835 Genome accession   NZ_AP028344
Coordinates   536439..537089 (-) Length   216 a.a.
NCBI ID   WP_002921201.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10331     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 531439..542089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8917_RS02800 (B10331_05400) - 531816..532820 (+) 1005 WP_079263877.1 hypothetical protein -
  R8917_RS02805 (B10331_05410) tlyA 532817..533578 (+) 762 WP_317725533.1 TlyA family RNA methyltransferase -
  R8917_RS02810 (B10331_05420) ribF 533544..534398 (+) 855 WP_317725534.1 bifunctional riboflavin kinase/FAD synthetase -
  R8917_RS02815 (B10331_05430) cmoA 534385..535095 (+) 711 WP_079460649.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8917_RS02820 (B10331_05440) - 535112..535306 (-) 195 WP_079263876.1 EexN family lipoprotein -
  R8917_RS02825 (B10331_05450) - 535297..535737 (-) 441 WP_052801307.1 EexN family lipoprotein -
  R8917_RS02830 (B10331_05460) - 535796..536428 (-) 633 WP_052781975.1 trimeric intracellular cation channel family protein -
  R8917_RS02835 (B10331_05470) CJE1441 536439..537089 (-) 651 WP_002921201.1 DNA/RNA non-specific endonuclease Regulator
  R8917_RS02840 (B10331_05480) nth 537086..537712 (-) 627 WP_218982743.1 endonuclease III -
  R8917_RS02845 (B10331_05490) peb4 537793..538614 (+) 822 WP_052804437.1 peptidylprolyl isomerase PEB4 -
  R8917_RS02850 (B10331_05500) fbaA 538614..539678 (+) 1065 WP_002880322.1 class II fructose-bisphosphate aldolase -
  R8917_RS02855 (B10331_05510) - 539773..541215 (+) 1443 WP_002854979.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25474.25 Da        Isoelectric Point: 9.8188

>NTDB_id=104510 R8917_RS02835 WP_002921201.1 536439..537089(-) (CJE1441) [Campylobacter jejuni strain BCH-10331]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNNENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=104510 R8917_RS02835 WP_002921201.1 536439..537089(-) (CJE1441) [Campylobacter jejuni strain BCH-10331]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAGGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATAATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639

Multiple sequence alignment