Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QQG89_RS03925 Genome accession   NZ_OX637961
Coordinates   807211..808407 (-) Length   398 a.a.
NCBI ID   WP_284160717.1    Uniprot ID   -
Organism   Escherichia coli O25b:H4-ST131 isolate 86     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 802211..813407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQG89_RS03915 - 805354..806343 (+) 990 WP_000028051.1 hypothetical protein -
  QQG89_RS03920 - 806503..807200 (+) 698 WP_223216367.1 IS1 family transposase -
  QQG89_RS03925 kpsS 807211..808407 (-) 1197 WP_284160717.1 capsular biosynthesis protein Regulator
  QQG89_RS03930 - 808442..810469 (-) 2028 WP_096778148.1 capsular polysaccharide biosynthesis protein -
  QQG89_RS03935 kdsB 810466..811206 (-) 741 WP_000030763.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQG89_RS03940 - 811216..812892 (-) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 47529.96 Da        Isoelectric Point: 10.2129

>NTDB_id=1045010 QQG89_RS03925 WP_284160717.1 807211..808407(-) (kpsS) [Escherichia coli O25b:H4-ST131 isolate 86]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMNSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNAVYYGDRVRKQIR

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=1045010 QQG89_RS03925 WP_284160717.1 807211..808407(-) (kpsS) [Escherichia coli O25b:H4-ST131 isolate 86]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGTGATCCGGATTTTTATCGTAAATTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGAACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCTAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGATGAAGACCCAGGTTAATGCGGTTTATTATGGGGATAGAGTAAGAAAACAAATAAGGTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

98.241

0.389

Multiple sequence alignment