Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8901_RS07480 Genome accession   NZ_AP028342
Coordinates   1465018..1466199 (-) Length   393 a.a.
NCBI ID   WP_060809666.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10330     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460018..1471199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8901_RS07450 (B10330_14840) - 1460562..1460903 (+) 342 WP_002784057.1 hypothetical protein -
  R8901_RS07455 (B10330_14850) flgM 1460966..1461163 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8901_RS07460 (B10330_14860) - 1461206..1461640 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8901_RS07465 (B10330_14870) flgK 1461650..1463476 (+) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  R8901_RS07470 (B10330_14880) - 1463493..1464257 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8901_RS07475 (B10330_14890) - 1464261..1465025 (+) 765 WP_002855821.1 TSUP family transporter -
  R8901_RS07480 (B10330_14900) ctsF 1465018..1466199 (-) 1182 WP_060809666.1 type II secretion system F family protein Machinery gene
  R8901_RS07485 (B10330_14910) ctsE 1466196..1467755 (-) 1560 WP_317725312.1 GspE/PulE family protein Machinery gene
  R8901_RS07490 (B10330_14920) ctsX 1467745..1468332 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8901_RS07495 (B10330_14930) ctsP 1468336..1468944 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8901_RS07500 (B10330_14940) ctsD 1468937..1470349 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8901_RS07505 (B10330_14950) ctsR 1470327..1470638 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45756.37 Da        Isoelectric Point: 9.0775

>NTDB_id=104498 R8901_RS07480 WP_060809666.1 1465018..1466199(-) (ctsF) [Campylobacter jejuni strain BCH-10330]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMYSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=104498 R8901_RS07480 WP_060809666.1 1465018..1466199(-) (ctsF) [Campylobacter jejuni strain BCH-10330]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGTACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985

Multiple sequence alignment